RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 DLEC1Q9Y238 1755 aa26.25■■□□□ 1.79
LSM6-207ENST00000515311 MTX1Q13505 466 aa26.25■■□□□ 1.79
LSM6-207ENST00000515311 C3orf67Q6ZVT6 689 aa26.25■■□□□ 1.79
LSM6-207ENST00000515311 TTLL11Q8NHH1 800 aa26.25■■□□□ 1.79
LSM6-207ENST00000515311 CCDC152Q4G0S7 254 aa26.24■■□□□ 1.79
LSM6-207ENST00000515311 LMBR1LQ6UX01 489 aa26.24■■□□□ 1.79
LSM6-207ENST00000515311 KIAA1551Q9HCM1 1747 aa26.24■■□□□ 1.79
LSM6-207ENST00000515311 CD2APQ9Y5K6 639 aa26.23■■□□□ 1.79
LSM6-207ENST00000515311 CEP85Q6P2H3 762 aa26.22■■□□□ 1.79
LSM6-207ENST00000515311 RPAP2Q8IXW5 612 aaPredicted RBP26.21■■□□□ 1.79
LSM6-207ENST00000515311 ERICH6BQ5W0A0 696 aa26.2■■□□□ 1.78
LSM6-207ENST00000515311 GREM2Q9H772 168 aa26.2■■□□□ 1.78
LSM6-207ENST00000515311 SRGNP10124 158 aa26.19■■□□□ 1.78
LSM6-207ENST00000515311 HOXA10P31260 410 aaPredicted RBP26.19■■□□□ 1.78
LSM6-207ENST00000515311 TGFB2P61812 414 aa26.19■■□□□ 1.78
LSM6-207ENST00000515311 ATP8B2P98198 1209 aa26.19■■□□□ 1.78
LSM6-207ENST00000515311 FAM161AQ3B820 660 aa26.19■■□□□ 1.78
LSM6-207ENST00000515311 RPGRQ92834 1020 aaKnown RBP26.19■■□□□ 1.78
LSM6-207ENST00000515311 H0YIN7 160 aa26.18■■□□□ 1.78
LSM6-207ENST00000515311 SRGAP3O43295 1099 aa26.18■■□□□ 1.78
LSM6-207ENST00000515311 NPR1P16066 1061 aa26.18■■□□□ 1.78
LSM6-207ENST00000515311 C2CD5Q86YS7 1000 aa26.18■■□□□ 1.78
LSM6-207ENST00000515311 CHMP3Q9Y3E7 222 aa26.18■■□□□ 1.78
LSM6-207ENST00000515311 IFIT5Q13325 482 aaKnown RBP26.17■■□□□ 1.78
LSM6-207ENST00000515311 CCDC57Q2TAC2 916 aa26.17■■□□□ 1.78
LSM6-207ENST00000515311 SSH3Q8TE77 659 aa26.17■■□□□ 1.78
LSM6-207ENST00000515311 PCDHB15Q9Y5E8 787 aa26.17■■□□□ 1.78
LSM6-207ENST00000515311 PNMA6EA0A0J9YXQ4 647 aa26.16■■□□□ 1.78
LSM6-207ENST00000515311 ITGA6P23229 1130 aa26.16■■□□□ 1.78
LSM6-207ENST00000515311 STYK1Q6J9G0 422 aa26.16■■□□□ 1.78
LSM6-207ENST00000515311 DDX46Q7L014 1031 aaKnown RBP26.16■■□□□ 1.78
LSM6-207ENST00000515311 MASTLQ96GX5 879 aa26.16■■□□□ 1.78
LSM6-207ENST00000515311 RBM17Q96I25 401 aaKnown RBP26.16■■□□□ 1.78
LSM6-207ENST00000515311 CCDC85AQ96PX6 553 aaPredicted RBP26.16■■□□□ 1.78
LSM6-207ENST00000515311 TAF1P21675 1872 aa26.16■■□□□ 1.78
LSM6-207ENST00000515311 BRCA1P38398 1863 aaKnown RBP26.15■■□□□ 1.78
LSM6-207ENST00000515311 ANKRD18BA2A2Z9 1011 aa26.15■■□□□ 1.78
LSM6-207ENST00000515311 HMMRO75330 724 aa26.15■■□□□ 1.78
LSM6-207ENST00000515311 POLA2Q14181 598 aa26.15■■□□□ 1.78
LSM6-207ENST00000515311 SIRT2Q8IXJ6 389 aa26.15■■□□□ 1.78
LSM6-207ENST00000515311 CRAMP1Q96RY5 1269 aa26.15■■□□□ 1.78
LSM6-207ENST00000515311 PPP1R1BQ9UD71 204 aaPredicted RBP26.15■■□□□ 1.78
LSM6-207ENST00000515311 SPEF2Q9C093 1822 aa26.14■■□□□ 1.78
LSM6-207ENST00000515311 CDC5LQ99459 802 aaKnown RBP26.14■■□□□ 1.78
LSM6-207ENST00000515311 COL4A1P02462 1669 aa26.13■■□□□ 1.77
LSM6-207ENST00000515311 CHRNA5P30532 468 aa26.13■■□□□ 1.77
LSM6-207ENST00000515311 RFX5P48382 616 aaPredicted RBP26.13■■□□□ 1.77
LSM6-207ENST00000515311 SEC31BQ9NQW1 1179 aa26.13■■□□□ 1.77
LSM6-207ENST00000515311 CACNA1SQ13698 1873 aa26.13■■□□□ 1.77
LSM6-207ENST00000515311 ALDH1B1P30837 517 aa26.12■■□□□ 1.77
LSM6-207ENST00000515311 KLHL34Q8N239 644 aa26.12■■□□□ 1.77
LSM6-207ENST00000515311 DPEP1P16444 411 aa26.11■■□□□ 1.77
LSM6-207ENST00000515311 GRAPQ13588 217 aa26.11■■□□□ 1.77
LSM6-207ENST00000515311 GRAPLQ8TC17 118 aaPredicted RBP26.11■■□□□ 1.77
LSM6-207ENST00000515311 FHDC1Q9C0D6 1143 aaPredicted RBP26.11■■□□□ 1.77
LSM6-207ENST00000515311 COPRSQ9NQ92 184 aa26.11■■□□□ 1.77
LSM6-207ENST00000515311 A0A0G2JLW4 131 aa26.1■■□□□ 1.77
LSM6-207ENST00000515311 KCNA3P22001 575 aa26.1■■□□□ 1.77
LSM6-207ENST00000515311 PTPN12Q05209 780 aaKnown RBP26.1■■□□□ 1.77
LSM6-207ENST00000515311 HDAC1Q13547 482 aaPredicted RBP26.1■■□□□ 1.77
LSM6-207ENST00000515311 TAF7LQ5H9L4 462 aa26.1■■□□□ 1.77
LSM6-207ENST00000515311 CNKSR1Q969H4 720 aa26.1■■□□□ 1.77
LSM6-207ENST00000515311 RPS8P62241 208 aaKnown RBP26.09■■□□□ 1.77
LSM6-207ENST00000515311 ANKRD18AQ8IVF6 992 aa26.09■■□□□ 1.77
LSM6-207ENST00000515311 ZNF622Q969S3 477 aaKnown RBP eCLIP26.09■■□□□ 1.77
LSM6-207ENST00000515311 LRRC37AA6NMS7 1700 aa26.08■■□□□ 1.77
LSM6-207ENST00000515311 BBOX1O75936 387 aa26.08■■□□□ 1.77
LSM6-207ENST00000515311 IGHMBP2P38935 993 aaKnown RBP26.08■■□□□ 1.77
LSM6-207ENST00000515311 TMC4Q7Z404 712 aa26.08■■□□□ 1.77
LSM6-207ENST00000515311 CELF1Q92879 486 aaKnown RBP26.08■■□□□ 1.77
LSM6-207ENST00000515311 FBXO3Q9UK99 471 aa26.08■■□□□ 1.77
LSM6-207ENST00000515311 ZNF594Q96JF6 807 aaPredicted RBP26.07■■□□□ 1.76
LSM6-207ENST00000515311 SLX4Q8IY92 1834 aa26.07■■□□□ 1.76
LSM6-207ENST00000515311 NLGN2Q8NFZ4 835 aa26.06■■□□□ 1.76
LSM6-207ENST00000515311 KLHDC4Q8TBB5 520 aa26.06■■□□□ 1.76
LSM6-207ENST00000515311 RWDD1Q9H446 243 aaPredicted RBP26.06■■□□□ 1.76
LSM6-207ENST00000515311 BSDC1Q9NW68 430 aaPredicted RBP26.06■■□□□ 1.76
LSM6-207ENST00000515311 PIM2Q9P1W9 311 aa26.06■■□□□ 1.76
LSM6-207ENST00000515311 NOP58Q9Y2X3 529 aaKnown RBP26.06■■□□□ 1.76
LSM6-207ENST00000515311 CIAO1O76071 339 aa26.05■■□□□ 1.76
LSM6-207ENST00000515311 PRPF40BQ6NWY9 871 aaKnown RBP26.05■■□□□ 1.76
LSM6-207ENST00000515311 LDHAL6AQ6ZMR3 332 aa26.05■■□□□ 1.76
LSM6-207ENST00000515311 TTLL6Q8N841 843 aa26.05■■□□□ 1.76
LSM6-207ENST00000515311 MPHOSPH8Q99549 860 aa26.05■■□□□ 1.76
LSM6-207ENST00000515311 SYT17Q9BSW7 474 aa26.05■■□□□ 1.76
LSM6-207ENST00000515311 PA2G4Q9UQ80 394 aaKnown RBP26.05■■□□□ 1.76
LSM6-207ENST00000515311 A0A1B0GUL6 1792 aa26.05■■□□□ 1.76
LSM6-207ENST00000515311 EYA2O00167 538 aa26.04■■□□□ 1.76
LSM6-207ENST00000515311 PPEF1O14829 653 aaPredicted RBP26.03■■□□□ 1.76
LSM6-207ENST00000515311 SURF6O75683 361 aaKnown RBP26.02■■□□□ 1.76
LSM6-207ENST00000515311 HSP90AB4PQ58FF6 505 aa26.02■■□□□ 1.76
LSM6-207ENST00000515311 SIL1Q9H173 461 aa26.02■■□□□ 1.76
LSM6-207ENST00000515311 DCTPP1Q9H773 170 aa26.02■■□□□ 1.76
LSM6-207ENST00000515311 CNNM1Q9NRU3 951 aa26.02■■□□□ 1.76
LSM6-207ENST00000515311 PPP4R2Q9NY27 417 aa26.02■■□□□ 1.76
LSM6-207ENST00000515311 RIPOR2Q9Y4F9 1068 aa26.02■■□□□ 1.76
LSM6-207ENST00000515311 ARFGEF1Q9Y6D6 1849 aa26.02■■□□□ 1.76
LSM6-207ENST00000515311 IL15P40933 162 aaPredicted RBP26.01■■□□□ 1.75
LSM6-207ENST00000515311 SRCAPQ6ZRS2 3230 aa26.01■■□□□ 1.75
LSM6-207ENST00000515311 ATG9AQ7Z3C6 839 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms