RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ERCC4Q92889 916 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 STRN4Q9NRL3 753 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 NSFL1CQ9UNZ2 370 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 RIOK3O14730 519 aaKnown RBP9.77□□□□□ -0.84
LIMCH1-216ENST00000512820 CCDC150Q8NCX0 1101 aa9.77□□□□□ -0.84
LIMCH1-216ENST00000512820 LGR6Q9HBX8 967 aa9.77□□□□□ -0.84
LIMCH1-216ENST00000512820 CDC37L1Q7L3B6 337 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 AMOTL1Q8IY63 956 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 CNNM3Q8NE01 707 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 CAGE1Q8TC20 777 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 TSC1Q92574 1164 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 AK7Q96M32 723 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 PIP4K2AP48426 406 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 TDO2P48775 406 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 LMBR1LQ6UX01 489 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 ZBTB3Q9H5J0 574 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 CBX8Q9HC52 389 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 ZCCHC11Q5TAX3 1644 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 HOXB7P09629 217 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 APOBRQ0VD83 1088 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 ME3Q16798 604 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 TAF3Q5VWG9 929 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 IL17REQ8NFR9 667 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 TM6SF1Q9BZW5 370 aa9.77□□□□□ -0.85
LIMCH1-216ENST00000512820 KLF18A0A0U1RQI7 1052 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 PTPDC1A2A3K4 754 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 PTH1RQ03431 593 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 IFNL2Q8IZJ0 200 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 CLSTN2Q9H4D0 955 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 V9GYY5 206 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 ATP7BP35670 1465 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 TFCP2Q12800 502 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 SMAP1Q8IYB5 467 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 KCNG4Q8TDN1 519 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 LEO1Q8WVC0 666 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 CWC25Q9NXE8 425 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 MTMR6Q9Y217 621 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 ERCC6L2Q5T890 1561 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 SPHKAPQ2M3C7 1700 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 RNMTO43148 476 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 TXLNAP40222 546 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 CLEC17AQ6ZS10 378 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 DHX32Q7L7V1 743 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 RASEFQ8IZ41 740 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 IP6K1Q92551 441 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 UBAC1Q9BSL1 405 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 ERLIN1O75477 346 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 CASQ1P31415 396 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 IFIT5Q13325 482 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 LEKR1Q6ZMV7 388 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 NCOA7Q8NI08 942 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 MTMR7Q9Y216 660 aa9.76□□□□□ -0.85
LIMCH1-216ENST00000512820 E9PCH4 1651 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 ABCA6Q8N139 1617 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 NOM1Q5C9Z4 860 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 CHST3Q7LGC8 479 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 KRT222Q8N1A0 295 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 CCDC82Q8N4S0 544 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 KLHDC4Q8TBB5 520 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 SIRT1Q96EB6 747 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 MPHOSPH8Q99549 860 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 NOL10Q9BSC4 688 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 PRDM11Q9NQV5 511 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 ZNF75DP51815 510 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 EIF4A1P60842 406 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 MLH3Q9UHC1 1453 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 GOLGA8AA7E2F4 631 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 NAP1L1P55209 391 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 KLHL10Q6JEL2 608 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 LSG1Q9H089 658 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 DDX21Q9NR30 783 aaKnown RBP eCLIP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 MAGEC2Q9UBF1 373 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 SYKP43405 635 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 BMS1Q14692 1282 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 ARHGAP29Q52LW3 1261 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 CCDC129Q6ZRS4 1044 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 RUFY1Q96T51 708 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 NAPBQ9H115 298 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 TMX1Q9H3N1 280 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 PAG1Q9NWQ8 432 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 CEP131Q9UPN4 1083 aa9.75□□□□□ -0.85
LIMCH1-216ENST00000512820 POLR3GO15318 223 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 SLU7O95391 586 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 KRT28Q7Z3Y7 464 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 CCDC144CPQ8IYA2 1237 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 SUCLG2Q96I99 432 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 GTPBP4Q9BZE4 634 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 SLC12A7Q9Y666 1083 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 PNPLA6Q8IY17 1366 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 YEATS2Q9ULM3 1422 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 IARSP41252 1262 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 UBASH3AP57075 661 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 CCDC102BQ68D86 513 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 MICU3Q86XE3 530 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 RNF17Q9BXT8 1623 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 IGSF3O75054 1194 aa9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 EIF3JO75822 258 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-216ENST00000512820 LIG1P18858 919 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms