RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 GRIN2CQ14957 1233 aa6.34□□□□□ -1.39
USP53-204ENST00000507906 CRELD1Q96HD1 420 aa6.34□□□□□ -1.39
USP53-204ENST00000507906 GPAMQ9HCL2 828 aa6.34□□□□□ -1.39
USP53-204ENST00000507906 SRA1Q9HD15 236 aaKnown RBP6.34□□□□□ -1.39
USP53-204ENST00000507906 FAM13BQ9NYF5 915 aa6.34□□□□□ -1.39
USP53-204ENST00000507906 ANKIB1Q9P2G1 1089 aa6.34□□□□□ -1.39
USP53-204ENST00000507906 PCDHGB7Q9Y5F8 929 aa6.34□□□□□ -1.39
USP53-204ENST00000507906 GPC6Q9Y625 555 aaPredicted RBP6.34□□□□□ -1.39
USP53-204ENST00000507906 A0A1B0GTH6 734 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 XYLBO75191 536 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 UPP2O95045 317 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 CYP2E1P05181 493 aaPredicted RBP6.33□□□□□ -1.4
USP53-204ENST00000507906 RPLP1P05386 114 aaKnown RBP6.33□□□□□ -1.4
USP53-204ENST00000507906 EIF4BP23588 611 aaKnown RBP6.33□□□□□ -1.4
USP53-204ENST00000507906 PDE12Q6L8Q7 609 aaKnown RBP6.33□□□□□ -1.4
USP53-204ENST00000507906 NXPE4Q6UWF7 544 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 TTC16Q8NEE8 873 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 SNX29Q8TEQ0 813 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 CEP63Q96MT8 703 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 TGIF2Q9GZN2 237 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 C12orf49Q9H741 205 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 SENP2Q9HC62 589 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 NPHS2Q9NP85 383 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 DDX41Q9UJV9 622 aaKnown RBP6.33□□□□□ -1.4
USP53-204ENST00000507906 DNMT3LQ9UJW3 386 aa6.33□□□□□ -1.4
USP53-204ENST00000507906 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.33□□□□□ -1.4
USP53-204ENST00000507906 SENP3-EIF4A1A0A087X0R7 540 aa6.32□□□□□ -1.4
USP53-204ENST00000507906 PHACTR2O75167 634 aa6.32□□□□□ -1.4
USP53-204ENST00000507906 HIF1AQ16665 826 aa6.32□□□□□ -1.4
USP53-204ENST00000507906 FRMD6Q96NE9 622 aa6.32□□□□□ -1.4
USP53-204ENST00000507906 BCL11AQ9H165 835 aa6.32□□□□□ -1.4
USP53-204ENST00000507906 LATS2Q9NRM7 1088 aa6.32□□□□□ -1.4
USP53-204ENST00000507906 SPG7Q9UQ90 795 aa6.32□□□□□ -1.4
USP53-204ENST00000507906 USP31Q70CQ4 1352 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 SOBPA7XYQ1 873 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 NEFLP07196 543 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 SFSWAPQ12872 951 aaKnown RBP6.31□□□□□ -1.4
USP53-204ENST00000507906 GALNT12Q8IXK2 581 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 GLIS3Q8NEA6 775 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 CRISPLD1Q9H336 500 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 CAPN10Q9HC96 672 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 NEUROD4Q9HD90 331 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 COPRSQ9NQ92 184 aa6.31□□□□□ -1.4
USP53-204ENST00000507906 FNDC3AQ9Y2H6 1198 aaKnown RBP6.31□□□□□ -1.4
USP53-204ENST00000507906 SASH3O75995 380 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 EGFRP00533 1210 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 USP17L7P0C7H9 530 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 PTPN12Q05209 780 aaKnown RBP6.3□□□□□ -1.4
USP53-204ENST00000507906 UBAP2LQ14157 1087 aaKnown RBP6.3□□□□□ -1.4
USP53-204ENST00000507906 GRM2Q14416 872 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 ZFP42Q96MM3 310 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 BCO2Q9BYV7 579 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 CCSER2Q9H7U1 834 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 STRN4Q9NRL3 753 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 ZFATQ9P243 1243 aa6.3□□□□□ -1.4
USP53-204ENST00000507906 F11P03951 625 aa6.29□□□□□ -1.4
USP53-204ENST00000507906 TARSP26639 723 aaKnown RBP6.29□□□□□ -1.4
USP53-204ENST00000507906 MAP3K10Q02779 954 aa6.29□□□□□ -1.4
USP53-204ENST00000507906 PEAR1Q5VY43 1037 aaPredicted RBP6.29□□□□□ -1.4
USP53-204ENST00000507906 DHX38Q92620 1227 aaKnown RBP6.29□□□□□ -1.4
USP53-204ENST00000507906 KIFC2Q96AC6 838 aa6.29□□□□□ -1.4
USP53-204ENST00000507906 BRD7Q9NPI1 651 aa6.29□□□□□ -1.4
USP53-204ENST00000507906 NLRP2Q9NX02 1062 aa6.29□□□□□ -1.4
USP53-204ENST00000507906 DYRK1BQ9Y463 629 aa6.29□□□□□ -1.4
USP53-204ENST00000507906 A0A1W2PP55 124 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 GMPRP36959 345 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 TAF1CQ15572 869 aaPredicted RBP6.28□□□□□ -1.4
USP53-204ENST00000507906 COL13A1Q5TAT6 717 aaPredicted RBP6.28□□□□□ -1.4
USP53-204ENST00000507906 KRT25Q7Z3Z0 450 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 NLRP13Q86W25 1043 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 SLC43A3Q8NBI5 491 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 C3orf58Q8NDZ4 430 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 GAS2L1Q99501 681 aaPredicted RBP6.28□□□□□ -1.4
USP53-204ENST00000507906 GSX2Q9BZM3 304 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 ABI2Q9NYB9 513 aaPredicted RBP6.28□□□□□ -1.4
USP53-204ENST00000507906 KANSL3Q9P2N6 904 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 PRKAG2Q9UGJ0 569 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 GGT7Q9UJ14 662 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 SALL4Q9UJQ4 1053 aa6.28□□□□□ -1.4
USP53-204ENST00000507906 F6X3S4 739 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 GIPC1O14908 333 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 EFSO43281 561 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 WIPF1O43516 503 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 MMP20O60882 483 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 ACPPP15309 386 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 KCNQ4P56696 695 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 INSM1Q01101 510 aaPredicted RBP6.27□□□□□ -1.41
USP53-204ENST00000507906 SAMD5Q5TGI4 173 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 ERMP1Q7Z2K6 904 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 USP48Q86UV5 1035 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 FAM177A1Q8N128 213 aaPredicted RBP6.27□□□□□ -1.41
USP53-204ENST00000507906 UBXN4Q92575 508 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 TANGO6Q9C0B7 1094 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 SUV39H2Q9H5I1 410 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 CUEDC1Q9NWM3 386 aaPredicted RBP6.27□□□□□ -1.41
USP53-204ENST00000507906 FAM8A1Q9UBU6 413 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 STK17AQ9UEE5 414 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 GJA3Q9Y6H8 435 aa6.27□□□□□ -1.41
USP53-204ENST00000507906 GADD45BO75293 160 aaPredicted RBP6.26□□□□□ -1.41
USP53-204ENST00000507906 CES1P23141 567 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms