RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 CASP7P55210 303 aa11.79□□□□□ -0.52
CLIP1-204ENST00000501271 TPRNQ4KMQ1 711 aa11.79□□□□□ -0.52
CLIP1-204ENST00000501271 XIRP1Q702N8 1843 aaKnown RBP11.79□□□□□ -0.52
CLIP1-204ENST00000501271 PHF14O94880 888 aa11.79□□□□□ -0.52
CLIP1-204ENST00000501271 ATP5JP18859 108 aa11.79□□□□□ -0.52
CLIP1-204ENST00000501271 HS1BP3Q53T59 392 aa11.79□□□□□ -0.52
CLIP1-204ENST00000501271 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.79□□□□□ -0.52
CLIP1-204ENST00000501271 CHGBP05060 677 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 MSNP26038 577 aaKnown RBP11.78□□□□□ -0.52
CLIP1-204ENST00000501271 UBE2HP62256 183 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 DNM1Q05193 864 aaKnown RBP11.78□□□□□ -0.52
CLIP1-204ENST00000501271 PLBD2Q8NHP8 589 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 VPS37CA5D8V6 355 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-204ENST00000501271 NBPF26B4DH59 902 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 TAF5LO75529 589 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 PSMA5P28066 241 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 CCDC183Q5T5S1 534 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 NBPF14Q5TI25 921 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 RNF20Q5VTR2 975 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 NBPF10Q6P3W6 841 aaKnown RBP11.78□□□□□ -0.52
CLIP1-204ENST00000501271 BLOC1S2Q6QNY1 142 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 CADPS2Q86UW7 1296 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 NBPF15Q8N660 670 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 DBNDD2Q9BQY9 259 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 NOL7Q9UMY1 257 aaKnown RBP11.78□□□□□ -0.52
CLIP1-204ENST00000501271 ATP6V1DQ9Y5K8 247 aa11.78□□□□□ -0.52
CLIP1-204ENST00000501271 ZNF609O15014 1411 aa11.77□□□□□ -0.52
CLIP1-204ENST00000501271 PAPPAQ13219 1627 aa11.77□□□□□ -0.52
CLIP1-204ENST00000501271 RPS6KB1P23443 525 aa11.77□□□□□ -0.52
CLIP1-204ENST00000501271 TOB2Q14106 344 aaPredicted RBP11.77□□□□□ -0.52
CLIP1-204ENST00000501271 SHANK3Q9BYB0 1731 aa11.77□□□□□ -0.53
CLIP1-204ENST00000501271 DNAJC2Q99543 621 aaKnown RBP11.77□□□□□ -0.53
CLIP1-204ENST00000501271 LAMA4Q16363 1823 aa11.77□□□□□ -0.53
CLIP1-204ENST00000501271 KCPQ6ZWJ8 1503 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 LMBR1LQ6UX01 489 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 CCDC129Q6ZRS4 1044 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 HMG20BQ9P0W2 317 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 RFX7Q2KHR2 1363 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 FOXO4P98177 505 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 TSGA10IPQ3SY00 556 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 USPL1Q5W0Q7 1092 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 TTLL7Q6ZT98 887 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 CDC37L1Q7L3B6 337 aa11.76□□□□□ -0.53
CLIP1-204ENST00000501271 SEC62Q99442 399 aaKnown RBP11.76□□□□□ -0.53
CLIP1-204ENST00000501271 DDX46Q7L014 1031 aaKnown RBP11.75□□□□□ -0.53
CLIP1-204ENST00000501271 HAUS7Q99871 368 aa11.75□□□□□ -0.53
CLIP1-204ENST00000501271 ALDH8A1Q9H2A2 487 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-204ENST00000501271 PCDH11XQ9BZA7 1347 aa11.75□□□□□ -0.53
CLIP1-204ENST00000501271 PCDH11YQ9BZA8 1340 aa11.75□□□□□ -0.53
CLIP1-204ENST00000501271 H7C1W4 665 aa11.75□□□□□ -0.53
CLIP1-204ENST00000501271 ANKRD1Q15327 319 aa11.75□□□□□ -0.53
CLIP1-204ENST00000501271 LARP1BQ659C4 914 aaKnown RBP11.75□□□□□ -0.53
CLIP1-204ENST00000501271 CHMP3Q9Y3E7 222 aa11.75□□□□□ -0.53
CLIP1-204ENST00000501271 CCDC9Q9Y3X0 531 aaKnown RBP11.75□□□□□ -0.53
CLIP1-204ENST00000501271 WDR17Q8IZU2 1322 aa11.74□□□□□ -0.53
CLIP1-204ENST00000501271 ATG9AQ7Z3C6 839 aa11.74□□□□□ -0.53
CLIP1-204ENST00000501271 FERMT3Q86UX7 667 aa11.74□□□□□ -0.53
CLIP1-204ENST00000501271 ZKSCAN5Q9Y2L8 839 aa11.74□□□□□ -0.53
CLIP1-204ENST00000501271 HCLS1P14317 486 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-204ENST00000501271 STK3Q13188 491 aa11.74□□□□□ -0.53
CLIP1-204ENST00000501271 CSPP1Q1MSJ5 1256 aa11.74□□□□□ -0.53
CLIP1-204ENST00000501271 BRINP3Q76B58 766 aa11.74□□□□□ -0.53
CLIP1-204ENST00000501271 ZCRB1Q8TBF4 217 aaKnown RBP11.74□□□□□ -0.53
CLIP1-204ENST00000501271 CCDC39Q9UFE4 941 aa11.74□□□□□ -0.53
CLIP1-204ENST00000501271 COL5A2P05997 1499 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-204ENST00000501271 ABCA3Q99758 1704 aa11.73□□□□□ -0.53
CLIP1-204ENST00000501271 ZNF500O60304 480 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-204ENST00000501271 A1BGP04217 495 aa11.73□□□□□ -0.53
CLIP1-204ENST00000501271 FAM173BQ6P4H8 233 aa11.73□□□□□ -0.53
CLIP1-204ENST00000501271 TOM1L2Q6ZVM7 507 aa11.73□□□□□ -0.53
CLIP1-204ENST00000501271 FAM184AQ8NB25 1140 aa11.73□□□□□ -0.53
CLIP1-204ENST00000501271 PRDM11Q9NQV5 511 aa11.73□□□□□ -0.53
CLIP1-204ENST00000501271 CWC25Q9NXE8 425 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-204ENST00000501271 OFD1O75665 1012 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 LETM1O95202 739 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-204ENST00000501271 CYP21A2P08686 494 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 SLFNL1Q499Z3 407 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 MCMDC2Q4G0Z9 681 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 TTC6Q86TZ1 520 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 FUCA2Q9BTY2 467 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 ZBTB3Q9H5J0 574 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 TOGARAM1Q9Y4F4 1720 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 PALLDQ8WX93 1383 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 KRT32Q14532 448 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 GIMAP6Q6P9H5 292 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 KBTBD3Q8NAB2 608 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 NEK1Q96PY6 1258 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 U3KPZ7 1027 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-204ENST00000501271 SH3TC1Q8TE82 1336 aa11.72□□□□□ -0.53
CLIP1-204ENST00000501271 ERVV-2B6SEH9 535 aa11.71□□□□□ -0.53
CLIP1-204ENST00000501271 PDCP20941 246 aa11.71□□□□□ -0.53
CLIP1-204ENST00000501271 NEUROD6Q96NK8 337 aa11.71□□□□□ -0.53
CLIP1-204ENST00000501271 USP25Q9UHP3 1055 aa11.71□□□□□ -0.53
CLIP1-204ENST00000501271 GOLIM4O00461 696 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 JAK2O60674 1132 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 HSPA2P54652 639 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 TIMM10P62072 90 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 KRT85P78386 507 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 UVSSAQ2YD98 709 aa11.71□□□□□ -0.54
CLIP1-204ENST00000501271 LRRC24Q50LG9 513 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms