RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 WWC3Q9ULE0 1092 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 EVA1CP58658 441 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 SKOR1P84550 965 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 CEP85Q6P2H3 762 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 ZFP91Q96JP5 570 aaPredicted RBP6.63□□□□□ -1.35
USF3-204ENST00000496826 UIMC1Q96RL1 719 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 CSRNP2Q9H175 543 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 TSPY2A6NKD2 308 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 TSPY3P0CV98 308 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 TSPY8P0CW00 308 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 CLUL1Q15846 466 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 TRIM45Q9H8W5 580 aaPredicted RBP6.63□□□□□ -1.35
USF3-204ENST00000496826 RTEL1Q9NZ71 1219 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 ANKRD30AQ9BXX3 1397 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 STX17P56962 302 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 DDX42Q86XP3 938 aaKnown RBP eCLIP6.63□□□□□ -1.35
USF3-204ENST00000496826 KRT222Q8N1A0 295 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 TNNC2P02585 160 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 TUBBP07437 444 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 SKIP12755 728 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 SERPINC1P01008 464 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 NFKBIAP25963 317 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 OTUD6BQ8N6M0 293 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 ZNF76P36508 570 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 NUP62P37198 522 aaPredicted RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 ESRRGP62508 458 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 TSNAXIP1Q2TAA8 658 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 CWC27Q6UX04 472 aaKnown RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 FSIP1Q8NA03 581 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 ORC6Q9Y5N6 252 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 SETD5Q9C0A6 1442 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 USP5P45974 858 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 C16orf62Q7Z3J2 963 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 CCDC65Q8IXS2 484 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 SPDL1Q96EA4 605 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 NEUROG2Q9H2A3 272 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 KIF23Q02241 960 aaPredicted RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 SKIDA1Q1XH10 827 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 USH1GQ495M9 461 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 KRT40Q6A162 431 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 STX19Q8N4C7 294 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 TTLL11Q8NHH1 800 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.62□□□□□ -1.35
USF3-204ENST00000496826 PKD2L1Q9P0L9 805 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 SOX13Q9UN79 622 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 EIF3CLB5ME19 914 aaKnown RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 RASGRF2O14827 1237 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 SLFN14P0C7P3 912 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 CCT6AP40227 531 aaKnown RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 PPFIA1Q13136 1202 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 MRPS26Q9BYN8 205 aaKnown RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 SYNCRIPO60506 623 aaKnown RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 PHACTR2O75167 634 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 BRD1O95696 1058 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 EIF3BP55884 814 aaKnown RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 LACTBP83111 547 aaPredicted RBP6.62□□□□□ -1.35
USF3-204ENST00000496826 TSPY1Q01534 308 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 PASD1Q8IV76 773 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 KIFC3Q9BVG8 833 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 PLCB1Q9NQ66 1216 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 GBP1P32455 592 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 SLC8A3P57103 927 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 PLCB3Q01970 1234 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 NRBF2Q96F24 287 aa6.62□□□□□ -1.35
USF3-204ENST00000496826 KCNA4P22459 653 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 MORC1Q86VD1 984 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 EFCAB13Q8IY85 973 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 BAG1Q99933 345 aaPredicted RBP6.61□□□□□ -1.35
USF3-204ENST00000496826 OLFML3Q9NRN5 406 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 AKAP2Q9Y2D5 859 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 KSR2Q6VAB6 950 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 SCG3Q8WXD2 468 aaKnown RBP6.61□□□□□ -1.35
USF3-204ENST00000496826 CARD10Q9BWT7 1032 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 KRT87PA6NCN2 255 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 KRT10P13645 584 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 G3BP1Q13283 466 aaKnown RBP eCLIP6.61□□□□□ -1.35
USF3-204ENST00000496826 SLF2Q8IX21 1173 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 MICAL1Q8TDZ2 1067 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 TRAIPQ9BWF2 469 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 ITM2BQ9Y287 266 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 UBXN8O00124 270 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 AK2P54819 239 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 SNX30Q5VWJ9 437 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 TNPO1Q92973 898 aaKnown RBP6.61□□□□□ -1.35
USF3-204ENST00000496826 PHF23Q9BUL5 403 aaPredicted RBP6.61□□□□□ -1.35
USF3-204ENST00000496826 GZF1Q9H116 711 aaPredicted RBP6.61□□□□□ -1.35
USF3-204ENST00000496826 SMCO2A6NFE2 343 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 RRP1P56182 461 aaKnown RBP6.61□□□□□ -1.35
USF3-204ENST00000496826 SYCP3Q8IZU3 236 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 CHMP2BQ9UQN3 213 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 CCDC125Q86Z20 511 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 UBAC1Q9BSL1 405 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 NUP85Q9BW27 656 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 RIC8AQ9NPQ8 531 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 DCDC2Q9UHG0 476 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 FAM160A1Q05DH4 1040 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 ZMYND11Q15326 602 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 ZSCAN23Q3MJ62 389 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 SPRYD3Q8NCJ5 442 aa6.61□□□□□ -1.35
USF3-204ENST00000496826 NLRP4Q96MN2 994 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms