RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 CSB-PGBD3P0DP91 1061 aa10.67□□□□□ -0.7
HPS4-217ENST00000496385 CLCN6P51797 869 aa10.67□□□□□ -0.7
HPS4-217ENST00000496385 SWT1Q5T5J6 900 aaKnown RBP10.67□□□□□ -0.7
HPS4-217ENST00000496385 LARP1Q6PKG0 1096 aaKnown RBP10.67□□□□□ -0.7
HPS4-217ENST00000496385 ANKRD44Q8N8A2 993 aa10.67□□□□□ -0.7
HPS4-217ENST00000496385 NFATC2IPQ8NCF5 419 aa10.67□□□□□ -0.7
HPS4-217ENST00000496385 SRRTQ9BXP5 876 aaKnown RBP10.67□□□□□ -0.7
HPS4-217ENST00000496385 QTRT2Q9H974 415 aaKnown RBP10.67□□□□□ -0.7
HPS4-217ENST00000496385 CLIP2Q9UDT6 1046 aa10.67□□□□□ -0.7
HPS4-217ENST00000496385 CEP83Q9Y592 693 aa10.67□□□□□ -0.7
HPS4-217ENST00000496385 ERBB3P21860 1342 aa10.67□□□□□ -0.7
HPS4-217ENST00000496385 BCL9LQ86UU0 1499 aa10.67□□□□□ -0.7
HPS4-217ENST00000496385 STX6O43752 255 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 TYRO3Q06418 890 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 RPAINQ86UA6 219 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 MNS1Q8NEH6 495 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 MRFAP1L1Q96HT8 127 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 DEF6Q9H4E7 631 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 MRVI1Q9Y6F6 885 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 PLEKHG2Q9H7P9 1386 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 MAP2P11137 1827 aaKnown RBP10.66□□□□□ -0.7
HPS4-217ENST00000496385 KIF1CO43896 1103 aaKnown RBP10.66□□□□□ -0.7
HPS4-217ENST00000496385 HOXC9P31274 260 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 CCDC93Q567U6 631 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 RBM43Q6ZSC3 357 aaKnown RBP10.66□□□□□ -0.7
HPS4-217ENST00000496385 CCDC91Q7Z6B0 441 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 SUGP1Q8IWZ8 645 aaKnown RBP10.66□□□□□ -0.7
HPS4-217ENST00000496385 FNBP4Q8N3X1 1017 aaPredicted RBP10.66□□□□□ -0.7
HPS4-217ENST00000496385 GTF3C6Q969F1 213 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 RRP15Q9Y3B9 282 aaKnown RBP10.66□□□□□ -0.7
HPS4-217ENST00000496385 ANKRD26Q9UPS8 1709 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 CPDO75976 1380 aa10.66□□□□□ -0.7
HPS4-217ENST00000496385 CCDC172P0C7W6 258 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 KCNJ6P48051 423 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 TTC31Q49AM3 519 aaPredicted RBP10.65□□□□□ -0.7
HPS4-217ENST00000496385 UNC5CLQ8IV45 518 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 NUP62CLQ9H1M0 184 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 C1orf115Q9H7X2 142 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 PEAK1Q9H792 1746 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.65□□□□□ -0.7
HPS4-217ENST00000496385 USHBP1Q8N6Y0 703 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 NEK11Q8NG66 645 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 ESYT1Q9BSJ8 1104 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 CBX8Q9HC52 389 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 USP54Q70EL1 1684 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 SLIT2O94813 1529 aa10.65□□□□□ -0.7
HPS4-217ENST00000496385 COL14A1Q05707 1796 aaKnown RBP10.65□□□□□ -0.71
HPS4-217ENST00000496385 EP400Q96L91 3159 aa10.65□□□□□ -0.71
HPS4-217ENST00000496385 A0A0G2JS52 829 aa10.65□□□□□ -0.71
HPS4-217ENST00000496385 VAMP4O75379 141 aa10.65□□□□□ -0.71
HPS4-217ENST00000496385 RPS6KA5O75582 802 aa10.65□□□□□ -0.71
HPS4-217ENST00000496385 ATP2B1P20020 1258 aa10.65□□□□□ -0.71
HPS4-217ENST00000496385 CCAR2Q8N163 923 aaKnown RBP10.65□□□□□ -0.71
HPS4-217ENST00000496385 TOM1L2Q6ZVM7 507 aa10.64□□□□□ -0.71
HPS4-217ENST00000496385 ANKRD24Q8TF21 1146 aa10.64□□□□□ -0.71
HPS4-217ENST00000496385 DDX19AQ9NUU7 478 aaKnown RBP10.64□□□□□ -0.71
HPS4-217ENST00000496385 NRBP1Q9UHY1 535 aa10.64□□□□□ -0.71
HPS4-217ENST00000496385 ACTN2P35609 894 aa10.64□□□□□ -0.71
HPS4-217ENST00000496385 GSDMDP57764 484 aa10.64□□□□□ -0.71
HPS4-217ENST00000496385 PPM1EQ8WY54 764 aa10.64□□□□□ -0.71
HPS4-217ENST00000496385 SMARCE1Q969G3 411 aa10.64□□□□□ -0.71
HPS4-217ENST00000496385 NLRP2Q9NX02 1062 aa10.64□□□□□ -0.71
HPS4-217ENST00000496385 COL18A1P39060 1754 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 COL5A2P05997 1499 aaPredicted RBP10.63□□□□□ -0.71
HPS4-217ENST00000496385 PSDA5PKW4 1024 aaPredicted RBP10.63□□□□□ -0.71
HPS4-217ENST00000496385 TRIM66O15016 1216 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 SKILP12757 684 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 SYT1P21579 422 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 GSCP56915 257 aaPredicted RBP10.63□□□□□ -0.71
HPS4-217ENST00000496385 LUZP1Q86V48 1076 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 HOMEZQ8IX15 550 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 IP6K1Q92551 441 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 DONSONQ9NYP3 566 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 LMO7Q8WWI1 1683 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 FIBPO43427 364 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 ERCC6LQ2NKX8 1250 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 ZNF772Q68DY9 489 aaPredicted RBP10.63□□□□□ -0.71
HPS4-217ENST00000496385 C16orf71Q8IYS4 520 aaPredicted RBP10.63□□□□□ -0.71
HPS4-217ENST00000496385 BANK1Q8NDB2 785 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 CEP89Q96ST8 783 aa10.63□□□□□ -0.71
HPS4-217ENST00000496385 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.63□□□□□ -0.71
HPS4-217ENST00000496385 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.63□□□□□ -0.71
HPS4-217ENST00000496385 COL3A1P02461 1466 aaPredicted RBP10.62□□□□□ -0.71
HPS4-217ENST00000496385 FAM98CQ17RN3 349 aaKnown RBP10.62□□□□□ -0.71
HPS4-217ENST00000496385 ARHGAP29Q52LW3 1261 aa10.62□□□□□ -0.71
HPS4-217ENST00000496385 CCDC158Q5M9N0 1113 aa10.62□□□□□ -0.71
HPS4-217ENST00000496385 UBXN4Q92575 508 aa10.62□□□□□ -0.71
HPS4-217ENST00000496385 ATP10DQ9P241 1426 aa10.62□□□□□ -0.71
HPS4-217ENST00000496385 CCP110O43303 1012 aa10.62□□□□□ -0.71
HPS4-217ENST00000496385 CPP00450 1065 aa10.62□□□□□ -0.71
HPS4-217ENST00000496385 ZBTB9Q96C00 473 aa10.62□□□□□ -0.71
HPS4-217ENST00000496385 ORC3Q9UBD5 711 aaPredicted RBP10.62□□□□□ -0.71
HPS4-217ENST00000496385 TRPC5Q9UL62 973 aaPredicted RBP10.62□□□□□ -0.71
HPS4-217ENST00000496385 FOXD4L6Q3SYB3 417 aaPredicted RBP10.61□□□□□ -0.71
HPS4-217ENST00000496385 ANO6Q4KMQ2 910 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 FOXD4L3Q6VB84 417 aaPredicted RBP10.61□□□□□ -0.71
HPS4-217ENST00000496385 LEKR1Q6ZMV7 388 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 MSL3Q8N5Y2 521 aaKnown RBP10.61□□□□□ -0.71
HPS4-217ENST00000496385 CARD10Q9BWT7 1032 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 TNMDQ9H2S6 317 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms