RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SAGE1Q9NXZ1 904 aa18.91■□□□□ 0.62
PRPF40A-211ENST00000493468 MIS18AQ9NYP9 233 aa18.91■□□□□ 0.62
PRPF40A-211ENST00000493468 RRP7AQ9Y3A4 280 aaKnown RBP18.91■□□□□ 0.62
PRPF40A-211ENST00000493468 AKAP11Q9UKA4 1901 aa18.91■□□□□ 0.62
PRPF40A-211ENST00000493468 DUOX1Q9NRD9 1551 aa18.9■□□□□ 0.62
PRPF40A-211ENST00000493468 BBOX1O75936 387 aa18.9■□□□□ 0.62
PRPF40A-211ENST00000493468 CNGB1Q14028 1251 aaPredicted RBP18.9■□□□□ 0.62
PRPF40A-211ENST00000493468 DPP8Q6V1X1 898 aaPredicted RBP18.9■□□□□ 0.62
PRPF40A-211ENST00000493468 SP8Q8IXZ3 490 aa18.9■□□□□ 0.62
PRPF40A-211ENST00000493468 TRPM4Q8TD43 1214 aa18.9■□□□□ 0.62
PRPF40A-211ENST00000493468 BCL2L13Q9BXK5 485 aa18.9■□□□□ 0.62
PRPF40A-211ENST00000493468 ZNF408Q9H9D4 720 aa18.9■□□□□ 0.62
PRPF40A-211ENST00000493468 MYL6BP14649 208 aa18.89■□□□□ 0.61
PRPF40A-211ENST00000493468 POLR2AP24928 1970 aaKnown RBP18.89■□□□□ 0.61
PRPF40A-211ENST00000493468 DDX60Q8IY21 1712 aaKnown RBP18.88■□□□□ 0.61
PRPF40A-211ENST00000493468 HUNKP57058 714 aa18.88■□□□□ 0.61
PRPF40A-211ENST00000493468 MPNDQ8N594 471 aa18.88■□□□□ 0.61
PRPF40A-211ENST00000493468 UTP14AQ9BVJ6 771 aaKnown RBP18.88■□□□□ 0.61
PRPF40A-211ENST00000493468 PPP2R1AP30153 589 aa18.87■□□□□ 0.61
PRPF40A-211ENST00000493468 ZIC5Q96T25 663 aa18.87■□□□□ 0.61
PRPF40A-211ENST00000493468 CNOT7Q9UIV1 285 aaKnown RBP18.87■□□□□ 0.61
PRPF40A-211ENST00000493468 FAM155AB1AL88 458 aaPredicted RBP18.86■□□□□ 0.61
PRPF40A-211ENST00000493468 H7C1D1 291 aa18.86■□□□□ 0.61
PRPF40A-211ENST00000493468 RAD17O75943 681 aa18.86■□□□□ 0.61
PRPF40A-211ENST00000493468 LRP10Q7Z4F1 713 aa18.86■□□□□ 0.61
PRPF40A-211ENST00000493468 DPF2Q92785 391 aa18.86■□□□□ 0.61
PRPF40A-211ENST00000493468 TAF1P21675 1872 aa18.86■□□□□ 0.61
PRPF40A-211ENST00000493468 YDJCA8MPS7 323 aa18.85■□□□□ 0.61
PRPF40A-211ENST00000493468 RGMBQ6NW40 437 aa18.85■□□□□ 0.61
PRPF40A-211ENST00000493468 TMC4Q7Z404 712 aa18.85■□□□□ 0.61
PRPF40A-211ENST00000493468 MICALL2Q8IY33 904 aa18.85■□□□□ 0.61
PRPF40A-211ENST00000493468 NEFMP07197 916 aa18.84■□□□□ 0.61
PRPF40A-211ENST00000493468 GRAPQ13588 217 aa18.84■□□□□ 0.61
PRPF40A-211ENST00000493468 USP48Q86UV5 1035 aa18.84■□□□□ 0.61
PRPF40A-211ENST00000493468 GRAPLQ8TC17 118 aaPredicted RBP18.84■□□□□ 0.61
PRPF40A-211ENST00000493468 CCDC102AQ96A19 550 aa18.84■□□□□ 0.61
PRPF40A-211ENST00000493468 DDX46Q7L014 1031 aaKnown RBP18.83■□□□□ 0.6
PRPF40A-211ENST00000493468 CCER1Q8TC90 406 aaPredicted RBP18.83■□□□□ 0.6
PRPF40A-211ENST00000493468 GBA2Q9HCG7 927 aaPredicted RBP18.83■□□□□ 0.6
PRPF40A-211ENST00000493468 SHTN1A0MZ66 631 aa18.82■□□□□ 0.6
PRPF40A-211ENST00000493468 PDIA6Q15084 440 aa18.82■□□□□ 0.6
PRPF40A-211ENST00000493468 HSP90AB3PQ58FF7 597 aa18.82■□□□□ 0.6
PRPF40A-211ENST00000493468 KRT26Q7Z3Y9 468 aa18.82■□□□□ 0.6
PRPF40A-211ENST00000493468 RPS12P25398 132 aaKnown RBP18.81■□□□□ 0.6
PRPF40A-211ENST00000493468 C2orf69Q8N8R5 385 aa18.81■□□□□ 0.6
PRPF40A-211ENST00000493468 KIF23Q02241 960 aaPredicted RBP18.8■□□□□ 0.6
PRPF40A-211ENST00000493468 NFE2L2Q16236 605 aa18.8■□□□□ 0.6
PRPF40A-211ENST00000493468 PRPF38BQ5VTL8 546 aaKnown RBP18.8■□□□□ 0.6
PRPF40A-211ENST00000493468 NLRP10Q86W26 655 aa18.8■□□□□ 0.6
PRPF40A-211ENST00000493468 RNF186Q9NXI6 227 aa18.8■□□□□ 0.6
PRPF40A-211ENST00000493468 PSMD14O00487 310 aa18.79■□□□□ 0.6
PRPF40A-211ENST00000493468 SLC10A3P09131 477 aa18.79■□□□□ 0.6
PRPF40A-211ENST00000493468 SOX10P56693 466 aa18.79■□□□□ 0.6
PRPF40A-211ENST00000493468 SAMD7Q7Z3H4 446 aa18.79■□□□□ 0.6
PRPF40A-211ENST00000493468 REM2Q8IYK8 340 aaPredicted RBP18.79■□□□□ 0.6
PRPF40A-211ENST00000493468 PLEKHF1Q96S99 279 aa18.79■□□□□ 0.6
PRPF40A-211ENST00000493468 ZBTB12Q9Y330 459 aaPredicted RBP18.79■□□□□ 0.6
PRPF40A-211ENST00000493468 SH3TC1Q8TE82 1336 aa18.78■□□□□ 0.6
PRPF40A-211ENST00000493468 HCLS1P14317 486 aaPredicted RBP18.78■□□□□ 0.6
PRPF40A-211ENST00000493468 ZNF157P51786 506 aaPredicted RBP18.78■□□□□ 0.6
PRPF40A-211ENST00000493468 CTU1Q7Z7A3 348 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-211ENST00000493468 DCPSQ96C86 337 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-211ENST00000493468 THUMPD2Q9BTF0 503 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-211ENST00000493468 PSME4Q14997 1843 aa18.77■□□□□ 0.6
PRPF40A-211ENST00000493468 TRPA1O75762 1119 aa18.77■□□□□ 0.6
PRPF40A-211ENST00000493468 WASHC4Q2M389 1173 aa18.77■□□□□ 0.6
PRPF40A-211ENST00000493468 TBC1D10BQ4KMP7 808 aaPredicted RBP18.77■□□□□ 0.6
PRPF40A-211ENST00000493468 DLK2Q6UY11 383 aa18.77■□□□□ 0.6
PRPF40A-211ENST00000493468 SCN9AQ15858 1988 aa18.77■□□□□ 0.59
PRPF40A-211ENST00000493468 ZNF609O15014 1411 aa18.76■□□□□ 0.59
PRPF40A-211ENST00000493468 ADM5C9JUS6 153 aa18.76■□□□□ 0.59
PRPF40A-211ENST00000493468 EGFRP00533 1210 aa18.76■□□□□ 0.59
PRPF40A-211ENST00000493468 PROSER3Q2NL68 480 aa18.76■□□□□ 0.59
PRPF40A-211ENST00000493468 BABAM1Q9NWV8 329 aa18.76■□□□□ 0.59
PRPF40A-211ENST00000493468 TRMT112Q9UI30 125 aaKnown RBP18.76■□□□□ 0.59
PRPF40A-211ENST00000493468 PAPPA2Q9BXP8 1791 aa18.76■□□□□ 0.59
PRPF40A-211ENST00000493468 TCIRG1Q13488 830 aa18.75■□□□□ 0.59
PRPF40A-211ENST00000493468 CSRNP1Q96S65 589 aa18.75■□□□□ 0.59
PRPF40A-211ENST00000493468 DBNDD1Q9H9R9 158 aa18.75■□□□□ 0.59
PRPF40A-211ENST00000493468 TSPYL4Q9UJ04 414 aa18.75■□□□□ 0.59
PRPF40A-211ENST00000493468 RTL9Q8NET4 1388 aa18.75■□□□□ 0.59
PRPF40A-211ENST00000493468 EIF2S2P20042 333 aaKnown RBP18.74■□□□□ 0.59
PRPF40A-211ENST00000493468 ECE2O60344 883 aa18.73■□□□□ 0.59
PRPF40A-211ENST00000493468 KIF4BQ2VIQ3 1234 aa18.73■□□□□ 0.59
PRPF40A-211ENST00000493468 COPS6Q7L5N1 327 aa18.73■□□□□ 0.59
PRPF40A-211ENST00000493468 SULF1Q8IWU6 871 aa18.73■□□□□ 0.59
PRPF40A-211ENST00000493468 EYA3Q99504 573 aa18.73■□□□□ 0.59
PRPF40A-211ENST00000493468 PNNQ9H307 717 aaKnown RBP18.73■□□□□ 0.59
PRPF40A-211ENST00000493468 ANXA1P04083 346 aa18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 FKBP1BP68106 108 aa18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 SF3B3Q15393 1217 aaKnown RBP18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 PKN2Q16513 984 aaKnown RBP18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 RASAL3Q86YV0 1011 aa18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 XAGE3Q8WTP9 111 aa18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 GGA3Q9NZ52 723 aa18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 POLLQ9UGP5 575 aa18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 NSFL1CQ9UNZ2 370 aaKnown RBP18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 COL4A1P02462 1669 aa18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 MAPK8IP3Q9UPT6 1336 aa18.72■□□□□ 0.59
PRPF40A-211ENST00000493468 CDCA5Q96FF9 252 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms