RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 ABCC4O15439 1325 aa16.07■□□□□ 0.16
GPNMB-214ENST00000492858 CLSPNQ9HAW4 1339 aa16.06■□□□□ 0.16
GPNMB-214ENST00000492858 MYL6BP14649 208 aa16.06■□□□□ 0.16
GPNMB-214ENST00000492858 TAF7Q15545 349 aaPredicted RBP16.06■□□□□ 0.16
GPNMB-214ENST00000492858 KRT26Q7Z3Y9 468 aa16.06■□□□□ 0.16
GPNMB-214ENST00000492858 PPP1R42Q7Z4L9 355 aa16.06■□□□□ 0.16
GPNMB-214ENST00000492858 MICALL2Q8IY33 904 aa16.06■□□□□ 0.16
GPNMB-214ENST00000492858 ZNF34Q8IZ26 560 aa16.06■□□□□ 0.16
GPNMB-214ENST00000492858 C2orf69Q8N8R5 385 aa16.06■□□□□ 0.16
GPNMB-214ENST00000492858 ZNF157P51786 506 aaPredicted RBP16.05■□□□□ 0.16
GPNMB-214ENST00000492858 CTU1Q7Z7A3 348 aaKnown RBP16.05■□□□□ 0.16
GPNMB-214ENST00000492858 MPNDQ8N594 471 aa16.05■□□□□ 0.16
GPNMB-214ENST00000492858 ZBTB12Q9Y330 459 aaPredicted RBP16.05■□□□□ 0.16
GPNMB-214ENST00000492858 NUP98P52948 1817 aa16.05■□□□□ 0.16
GPNMB-214ENST00000492858 YDJCA8MPS7 323 aa16.04■□□□□ 0.16
GPNMB-214ENST00000492858 SAMD7Q7Z3H4 446 aa16.04■□□□□ 0.16
GPNMB-214ENST00000492858 CFAP53Q96M91 514 aa16.04■□□□□ 0.16
GPNMB-214ENST00000492858 LAMB4A4D0S4 1761 aa16.04■□□□□ 0.16
GPNMB-214ENST00000492858 ADM5C9JUS6 153 aa16.03■□□□□ 0.16
GPNMB-214ENST00000492858 HTATSF1O43719 755 aaKnown RBP16.03■□□□□ 0.16
GPNMB-214ENST00000492858 BBOX1O75936 387 aa16.03■□□□□ 0.16
GPNMB-214ENST00000492858 U2AF1L5P0DN76 240 aaPredicted RBP16.03■□□□□ 0.16
GPNMB-214ENST00000492858 U2AF1Q01081 240 aaKnown RBP eCLIP16.03■□□□□ 0.16
GPNMB-214ENST00000492858 TBC1D10BQ4KMP7 808 aaPredicted RBP16.03■□□□□ 0.16
GPNMB-214ENST00000492858 PARP10Q53GL7 1025 aa16.03■□□□□ 0.16
GPNMB-214ENST00000492858 GIGYF2Q6Y7W6 1299 aaKnown RBP16.03■□□□□ 0.16
GPNMB-214ENST00000492858 SP8Q8IXZ3 490 aa16.03■□□□□ 0.16
GPNMB-214ENST00000492858 NUDCQ9Y266 331 aa16.03■□□□□ 0.16
GPNMB-214ENST00000492858 MKI67P46013 3256 aaKnown RBP16.02■□□□□ 0.16
GPNMB-214ENST00000492858 DPF2Q92785 391 aa16.02■□□□□ 0.16
GPNMB-214ENST00000492858 CSRNP1Q96S65 589 aa16.02■□□□□ 0.16
GPNMB-214ENST00000492858 UTP14AQ9BVJ6 771 aaKnown RBP16.02■□□□□ 0.16
GPNMB-214ENST00000492858 HPS5Q9UPZ3 1129 aa16.02■□□□□ 0.16
GPNMB-214ENST00000492858 PSMD14O00487 310 aa16.01■□□□□ 0.15
GPNMB-214ENST00000492858 EGFRP00533 1210 aa16.01■□□□□ 0.15
GPNMB-214ENST00000492858 SLC10A3P09131 477 aa16.01■□□□□ 0.15
GPNMB-214ENST00000492858 SLC10A5Q5PT55 438 aa16.01■□□□□ 0.15
GPNMB-214ENST00000492858 DCPSQ96C86 337 aaKnown RBP16.01■□□□□ 0.15
GPNMB-214ENST00000492858 PCGF6Q9BYE7 350 aa16.01■□□□□ 0.15
GPNMB-214ENST00000492858 EIF4A1P60842 406 aaKnown RBP16■□□□□ 0.15
GPNMB-214ENST00000492858 TRIM26Q12899 539 aaPredicted RBP16■□□□□ 0.15
GPNMB-214ENST00000492858 RBM26Q5T8P6 1007 aaKnown RBP16■□□□□ 0.15
GPNMB-214ENST00000492858 HCLS1P14317 486 aaPredicted RBP15.99■□□□□ 0.15
GPNMB-214ENST00000492858 DDX46Q7L014 1031 aaKnown RBP15.99■□□□□ 0.15
GPNMB-214ENST00000492858 PNISRQ8TF01 805 aaKnown RBP15.99■□□□□ 0.15
GPNMB-214ENST00000492858 GRAPQ13588 217 aa15.98■□□□□ 0.15
GPNMB-214ENST00000492858 GRAPLQ8TC17 118 aaPredicted RBP15.98■□□□□ 0.15
GPNMB-214ENST00000492858 DBNDD1Q9H9R9 158 aa15.98■□□□□ 0.15
GPNMB-214ENST00000492858 PKN2Q16513 984 aaKnown RBP15.97■□□□□ 0.15
GPNMB-214ENST00000492858 SULF1Q8IWU6 871 aa15.97■□□□□ 0.15
GPNMB-214ENST00000492858 THUMPD2Q9BTF0 503 aaKnown RBP15.97■□□□□ 0.15
GPNMB-214ENST00000492858 GGA3Q9NZ52 723 aa15.97■□□□□ 0.15
GPNMB-214ENST00000492858 HDAC9Q9UKV0 1011 aa15.97■□□□□ 0.15
GPNMB-214ENST00000492858 DUOX1Q9NRD9 1551 aa15.96■□□□□ 0.15
GPNMB-214ENST00000492858 RPS12P25398 132 aaKnown RBP15.96■□□□□ 0.15
GPNMB-214ENST00000492858 WASHC4Q2M389 1173 aa15.96■□□□□ 0.15
GPNMB-214ENST00000492858 KIF4BQ2VIQ3 1234 aa15.96■□□□□ 0.15
GPNMB-214ENST00000492858 RASAL3Q86YV0 1011 aa15.96■□□□□ 0.15
GPNMB-214ENST00000492858 REM2Q8IYK8 340 aaPredicted RBP15.96■□□□□ 0.15
GPNMB-214ENST00000492858 GCC1Q96CN9 775 aa15.96■□□□□ 0.15
GPNMB-214ENST00000492858 ERBB4Q15303 1308 aa15.95■□□□□ 0.14
GPNMB-214ENST00000492858 RIMBP2O15034 1052 aa15.95■□□□□ 0.14
GPNMB-214ENST00000492858 TMC4Q7Z404 712 aa15.95■□□□□ 0.14
GPNMB-214ENST00000492858 AKAP11Q9UKA4 1901 aa15.95■□□□□ 0.14
GPNMB-214ENST00000492858 ASTN2O75129 1339 aaPredicted RBP15.94■□□□□ 0.14
GPNMB-214ENST00000492858 HTTP42858 3142 aa15.94■□□□□ 0.14
GPNMB-214ENST00000492858 LRP10Q7Z4F1 713 aa15.94■□□□□ 0.14
GPNMB-214ENST00000492858 NLRP10Q86W26 655 aa15.94■□□□□ 0.14
GPNMB-214ENST00000492858 ZNF296Q8WUU4 475 aaPredicted RBP15.94■□□□□ 0.14
GPNMB-214ENST00000492858 CDCA5Q96FF9 252 aa15.94■□□□□ 0.14
GPNMB-214ENST00000492858 KCNQ5Q9NR82 932 aa15.94■□□□□ 0.14
GPNMB-214ENST00000492858 KDM3BQ7LBC6 1761 aa15.94■□□□□ 0.14
GPNMB-214ENST00000492858 RTL9Q8NET4 1388 aa15.93■□□□□ 0.14
GPNMB-214ENST00000492858 C6orf229H3BNL8 230 aa15.93■□□□□ 0.14
GPNMB-214ENST00000492858 ECE2O60344 883 aa15.93■□□□□ 0.14
GPNMB-214ENST00000492858 TBC1D8O95759 1140 aa15.93■□□□□ 0.14
GPNMB-214ENST00000492858 DOK7Q18PE1 504 aa15.93■□□□□ 0.14
GPNMB-214ENST00000492858 TRMT112Q9UI30 125 aaKnown RBP15.93■□□□□ 0.14
GPNMB-214ENST00000492858 NSFL1CQ9UNZ2 370 aaKnown RBP15.93■□□□□ 0.14
GPNMB-214ENST00000492858 CENPFP49454 3210 aa15.92■□□□□ 0.14
GPNMB-214ENST00000492858 ANXA1P04083 346 aa15.92■□□□□ 0.14
GPNMB-214ENST00000492858 EIF2S2P20042 333 aaKnown RBP15.92■□□□□ 0.14
GPNMB-214ENST00000492858 PROSER3Q2NL68 480 aa15.92■□□□□ 0.14
GPNMB-214ENST00000492858 SH3TC1Q8TE82 1336 aa15.92■□□□□ 0.14
GPNMB-214ENST00000492858 LAMB2P55268 1798 aa15.91■□□□□ 0.14
GPNMB-214ENST00000492858 PDIA6Q15084 440 aa15.91■□□□□ 0.14
GPNMB-214ENST00000492858 HSP90AB3PQ58FF7 597 aa15.91■□□□□ 0.14
GPNMB-214ENST00000492858 HABP4Q5JVS0 413 aaKnown RBP15.91■□□□□ 0.14
GPNMB-214ENST00000492858 POLLQ9UGP5 575 aa15.91■□□□□ 0.14
GPNMB-214ENST00000492858 POLR2AP24928 1970 aaKnown RBP15.91■□□□□ 0.14
GPNMB-214ENST00000492858 ANKRD36CQ5JPF3 1778 aa15.9■□□□□ 0.14
GPNMB-214ENST00000492858 NEFMP07197 916 aa15.9■□□□□ 0.14
GPNMB-214ENST00000492858 ANGEL2Q5VTE6 544 aaKnown RBP15.9■□□□□ 0.14
GPNMB-214ENST00000492858 FBXO46Q6PJ61 603 aaPredicted RBP15.9■□□□□ 0.14
GPNMB-214ENST00000492858 ZNF428Q96B54 188 aa15.9■□□□□ 0.14
GPNMB-214ENST00000492858 BRCA2P51587 3418 aa15.89■□□□□ 0.13
GPNMB-214ENST00000492858 LRRC37AA6NMS7 1700 aa15.89■□□□□ 0.13
GPNMB-214ENST00000492858 PPP2R1AP30153 589 aa15.89■□□□□ 0.13
GPNMB-214ENST00000492858 FKBP1BP68106 108 aa15.89■□□□□ 0.13
GPNMB-214ENST00000492858 GPSM2P81274 684 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms