RNA–Protein interactions for RNA: ENST00000492692.1

CSMD3-206, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 1,830 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-206ENST00000492692 AKAP2Q9Y2D5 859 aa12.91□□□□□ -0.34
CSMD3-206ENST00000492692 TPD52L2O43399 206 aaKnown RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 CASTP20810 708 aaKnown RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 CWC27Q6UX04 472 aaKnown RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 DZIP1LQ8IYY4 767 aaKnown RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 IRX2Q9BZI1 471 aaPredicted RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 BATF3Q9NR55 127 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 LMCD1Q9NZU5 365 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 DDX19BQ9UMR2 479 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 RIMBP3CA6NJZ7 1639 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 RIMBP3BA6NNM3 1639 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 RIMBP3Q9UFD9 1639 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 SBNO2Q9Y2G9 1366 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 RBM47A0AV96 593 aaKnown RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 EPB41L2O43491 1005 aaKnown RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 RTN3O95197 1032 aaPredicted RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 PAX3P23760 479 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 CDC25BP30305 580 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 ERCC6LQ2NKX8 1250 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 ARHGAP29Q52LW3 1261 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 PLEKHO1Q53GL0 409 aaPredicted RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 ZKSCAN4Q969J2 545 aaPredicted RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 ARPC5LQ9BPX5 153 aa12.9□□□□□ -0.34
CSMD3-206ENST00000492692 CWC25Q9NXE8 425 aaPredicted RBP12.9□□□□□ -0.34
CSMD3-206ENST00000492692 MX1P20591 662 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 GCKP35557 465 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 SFSWAPQ12872 951 aaKnown RBP12.89□□□□□ -0.35
CSMD3-206ENST00000492692 SPATA21Q7Z572 469 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 IQCA1Q86XH1 822 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 AMOTL1Q8IY63 956 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 MAB21L3Q8N8X9 362 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 C17orf50Q8WW18 174 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 ADGRB2O60241 1585 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 CHD1O14646 1710 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 AK9Q5TCS8 1911 aa12.89□□□□□ -0.35
CSMD3-206ENST00000492692 AP5Z1O43299 807 aa12.88□□□□□ -0.35
CSMD3-206ENST00000492692 HCLS1P14317 486 aaPredicted RBP12.88□□□□□ -0.35
CSMD3-206ENST00000492692 NAP1L1P55209 391 aaKnown RBP12.88□□□□□ -0.35
CSMD3-206ENST00000492692 CC2D1AQ6P1N0 951 aaPredicted RBP12.88□□□□□ -0.35
CSMD3-206ENST00000492692 MYLK4Q86YV6 388 aaPredicted RBP12.88□□□□□ -0.35
CSMD3-206ENST00000492692 C3orf20Q8ND61 904 aa12.88□□□□□ -0.35
CSMD3-206ENST00000492692 MAGEC3Q8TD91 643 aa12.88□□□□□ -0.35
CSMD3-206ENST00000492692 ZCCHC17Q9NP64 241 aaKnown RBP12.88□□□□□ -0.35
CSMD3-206ENST00000492692 SASH3O75995 380 aa12.88□□□□□ -0.35
CSMD3-206ENST00000492692 FOXR1Q6PIV2 292 aa12.88□□□□□ -0.35
CSMD3-206ENST00000492692 HELBQ8NG08 1087 aaPredicted RBP12.88□□□□□ -0.35
CSMD3-206ENST00000492692 SAAL1Q96ER3 474 aa12.88□□□□□ -0.35
CSMD3-206ENST00000492692 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.88□□□□□ -0.35
CSMD3-206ENST00000492692 ERVK-7P63135 1459 aa12.88□□□□□ -0.35
CSMD3-206ENST00000492692 PTPRTO14522 1441 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 PDLIM1O00151 329 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 ERC2O15083 957 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 TMED1Q13445 227 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 BMP2KLQ5H9B9 411 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 ATL2Q8NHH9 583 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 XAGE2Q96GT9 111 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 MYO6Q9UM54 1294 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 SYCP2Q9BX26 1530 aa12.87□□□□□ -0.35
CSMD3-206ENST00000492692 BRD1O95696 1058 aa12.86□□□□□ -0.35
CSMD3-206ENST00000492692 NUTM2GQ5VZR2 741 aa12.86□□□□□ -0.35
CSMD3-206ENST00000492692 MFN1Q8IWA4 741 aa12.86□□□□□ -0.35
CSMD3-206ENST00000492692 TCP11L2Q8N4U5 519 aa12.86□□□□□ -0.35
CSMD3-206ENST00000492692 TDRD7Q8NHU6 1098 aaKnown RBP12.86□□□□□ -0.35
CSMD3-206ENST00000492692 PARD3BQ8TEW8 1205 aa12.86□□□□□ -0.35
CSMD3-206ENST00000492692 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
CSMD3-206ENST00000492692 MAP2K7O14733 419 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 AHCYL1O43865 530 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 NUCB1Q02818 461 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 IQCB1Q15051 598 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 ACBD5Q5T8D3 534 aaPredicted RBP12.85□□□□□ -0.35
CSMD3-206ENST00000492692 TLDC1Q6P9B6 456 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 ZCRB1Q8TBF4 217 aaKnown RBP12.85□□□□□ -0.35
CSMD3-206ENST00000492692 UBXN4Q92575 508 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 TBC1D5Q92609 795 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 EZH1Q92800 747 aaPredicted RBP12.85□□□□□ -0.35
CSMD3-206ENST00000492692 CCDC34Q96HJ3 373 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 ACBD3Q9H3P7 528 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 KIF9Q9HAQ2 790 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 UTP6Q9NYH9 597 aaKnown RBP12.85□□□□□ -0.35
CSMD3-206ENST00000492692 MYOM2P54296 1465 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 CLTCL1P53675 1640 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 EFCAB8A8MWE9 144 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 SRGAP3O43295 1099 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 FMNL1O95466 1100 aaPredicted RBP12.85□□□□□ -0.35
CSMD3-206ENST00000492692 PYGBP11216 843 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 NAT1P18440 290 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 CLNS1AP54105 237 aaKnown RBP12.85□□□□□ -0.35
CSMD3-206ENST00000492692 PKP1Q13835 747 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 NME8Q8N427 588 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 SPC24Q8NBT2 197 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 LSM14AQ8ND56 463 aaKnown RBP12.85□□□□□ -0.35
CSMD3-206ENST00000492692 OR8K1Q8NGG5 319 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 FAM163AQ96GL9 167 aaPredicted RBP12.85□□□□□ -0.35
CSMD3-206ENST00000492692 FUT8Q9BYC5 575 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 TRIM7Q9C029 511 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 ZNF518AQ6AHZ1 1483 aa12.85□□□□□ -0.35
CSMD3-206ENST00000492692 FESP07332 822 aa12.84□□□□□ -0.35
CSMD3-206ENST00000492692 NBPF7P0C2Y1 421 aaPredicted RBP12.84□□□□□ -0.35
CSMD3-206ENST00000492692 DEUP1Q05D60 604 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms