RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	HHIPL1	Q96JK4	782 aa		6.28	□□□□□ -1.4
UBR4-215	ENST00000492606	SNRK	Q9NRH2	765 aa		6.28	□□□□□ -1.4
UBR4-215	ENST00000492606	HCN4	Q9Y3Q4	1203 aa		6.28	□□□□□ -1.4
UBR4-215	ENST00000492606	CFAP54	Q96N23	3096 aa		6.28	□□□□□ -1.4
UBR4-215	ENST00000492606	MAST4	O15021	2626 aa		6.28	□□□□□ -1.4
UBR4-215	ENST00000492606	MOXD2P	A6NHM9	499 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	SNPH	O15079	494 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	TRAK2	O60296	914 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	PSEN2	P49810	448 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	KIF23	Q02241	960 aa	Predicted RBP	6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	SAFB2	Q14151	953 aa	Known RBP eCLIP	6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	RSBN1L	Q6PCB5	846 aa	Predicted RBP	6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	ZNF296	Q8WUU4	475 aa	Predicted RBP	6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	KCNK17	Q96T54	332 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	HACL1	Q9UJ83	578 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	HDAC9	Q9UKV0	1011 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	PCDHB15	Q9Y5E8	787 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	ANKRD36B	Q8N2N9	1353 aa		6.27	□□□□□ -1.41
UBR4-215	ENST00000492606	MYOM3	Q5VTT5	1437 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	FASN	P49327	2511 aa	Known RBP	6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	FAM155A	B1AL88	458 aa	Predicted RBP	6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	NBPF26	B4DH59	902 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	SLC10A3	P09131	477 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	NDUFV2	P19404	249 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	SSFA2	P28290	1259 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	FOXK2	Q01167	660 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	COL9A2	Q14055	689 aa	Predicted RBP	6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	DMRTA1	Q5VZB9	504 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	INTS3	Q68E01	1043 aa	Known RBP	6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	KIAA1468	Q9P260	1216 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	CHIC2	Q9UKJ5	165 aa		6.26	□□□□□ -1.41
UBR4-215	ENST00000492606	DDX11L8	A8MPP1	907 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	LILRB3	O75022	631 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	QPCT	Q16769	361 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	PNMA8A	Q86V59	439 aa	Predicted RBP	6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	PACS2	Q86VP3	889 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	ABTB2	Q8N961	1025 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	BANK1	Q8NDB2	785 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	LRFN3	Q9BTN0	628 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	INSR	P06213	1382 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	CCDC7	Q96M83	1385 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	FER1L6	Q2WGJ9	1857 aa		6.25	□□□□□ -1.41
UBR4-215	ENST00000492606	CFAP47	Q6ZTR5	3102 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	USP47	Q96K76	1375 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	SPDYE5	A6NIY4	337 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	CELF2	O95319	508 aa	Known RBP	6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	CSB-PGBD3	P0DP91	1061 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	GJA5	P36382	358 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	DIXDC1	Q155Q3	683 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	RTL5	Q5HYW3	569 aa	Predicted RBP	6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	DDX54	Q8TDD1	881 aa	Known RBP	6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	SLC4A5	Q9BY07	1137 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	COG6	Q9Y2V7	657 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	RNF123	Q5XPI4	1314 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	ZNF541	Q9H0D2	1346 aa		6.24	□□□□□ -1.41
UBR4-215	ENST00000492606	POTEB3	A0JP26	581 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	WTIP	A6NIX2	430 aa	Predicted RBP	6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	APBB1	O00213	710 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	GCGR	P47871	477 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	TMF1	P82094	1093 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	TJAP1	Q5JTD0	557 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	POTEB	Q6S5H4	581 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	SULF1	Q8IWU6	871 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	NLGN1	Q8N2Q7	840 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	MTMR14	Q8NCE2	650 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	DPF3	Q92784	378 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	SIRT1	Q96EB6	747 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	CSRNP1	Q96S65	589 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	STAP2	Q9UGK3	403 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	PCDHGC3	Q9UN70	934 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	PARP3	Q9Y6F1	533 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	ACE	P12821	1306 aa		6.23	□□□□□ -1.41
UBR4-215	ENST00000492606	GPR179	Q6PRD1	2367 aa		6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	USP34	Q70CQ2	3546 aa		6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	ST18	O60284	1047 aa		6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	IL2RB	P14784	551 aa		6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	SRPK2	P78362	688 aa	Known RBP	6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	MAP3K11	Q16584	847 aa		6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	SWT1	Q5T5J6	900 aa	Known RBP	6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	HLA-C	Q95604	372 aa		6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	RABGEF1	Q9UJ41	708 aa		6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	YTHDC2	Q9H6S0	1430 aa	Known RBP	6.22	□□□□□ -1.41
UBR4-215	ENST00000492606	DLEC1	Q9Y238	1755 aa		6.21	□□□□□ -1.41
UBR4-215	ENST00000492606	FLNB	O75369	2602 aa	Known RBP	6.21	□□□□□ -1.41
UBR4-215	ENST00000492606	KIF1B	O60333	1816 aa		6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	BHMG1	C9JSJ3	638 aa	Predicted RBP	6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	ARHGAP33	O14559	1287 aa		6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	ZBTB7B	O15156	539 aa	Predicted RBP	6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	RGS20	O76081	388 aa		6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	TBC1D8	O95759	1140 aa		6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	TMEM259	Q4ZIN3	620 aa		6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	VARS2	Q5ST30	1063 aa	Known RBP	6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	LINC00116	Q8NCU8	138 aa		6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	MAFA	Q8NHW3	353 aa	Predicted RBP	6.21	□□□□□ -1.42
UBR4-215	ENST00000492606	PALLD	Q8WX93	1383 aa		6.2	□□□□□ -1.42
UBR4-215	ENST00000492606	ANKRD30A	Q9BXX3	1397 aa		6.2	□□□□□ -1.42
UBR4-215	ENST00000492606	DAPK1	P53355	1430 aa		6.2	□□□□□ -1.42
UBR4-215	ENST00000492606	HOXA2	O43364	376 aa		6.2	□□□□□ -1.42
UBR4-215	ENST00000492606	KDM4A	O75164	1064 aa		6.2	□□□□□ -1.42
UBR4-215	ENST00000492606	GYS1	P13807	737 aa		6.2	□□□□□ -1.42

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