RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 NUDT8Q8WV74 236 aa9.46□□□□□ -0.9
PTPN4-212ENST00000488896 EFCC1Q9HA90 598 aa9.46□□□□□ -0.9
PTPN4-212ENST00000488896 GPAT2Q6NUI2 795 aa9.45□□□□□ -0.9
PTPN4-212ENST00000488896 MICALL1Q8N3F8 863 aa9.45□□□□□ -0.9
PTPN4-212ENST00000488896 GPR152Q8TDT2 470 aa9.45□□□□□ -0.9
PTPN4-212ENST00000488896 PLVAPQ9BX97 442 aa9.45□□□□□ -0.9
PTPN4-212ENST00000488896 KCNMB2Q9Y691 235 aa9.45□□□□□ -0.9
PTPN4-212ENST00000488896 CPB1P15086 417 aa9.44□□□□□ -0.9
PTPN4-212ENST00000488896 DHX32Q7L7V1 743 aaKnown RBP9.44□□□□□ -0.9
PTPN4-212ENST00000488896 ATCAYQ86WG3 371 aa9.44□□□□□ -0.9
PTPN4-212ENST00000488896 GTF3C2Q8WUA4 911 aaPredicted RBP9.44□□□□□ -0.9
PTPN4-212ENST00000488896 PIK3R5Q8WYR1 880 aa9.44□□□□□ -0.9
PTPN4-212ENST00000488896 TRIM11Q96F44 468 aa9.44□□□□□ -0.9
PTPN4-212ENST00000488896 MTMR3Q13615 1198 aa9.43□□□□□ -0.9
PTPN4-212ENST00000488896 TRIP4Q15650 581 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-212ENST00000488896 HFE2Q6ZVN8 426 aa9.43□□□□□ -0.9
PTPN4-212ENST00000488896 FAM35AQ86V20 835 aa9.43□□□□□ -0.9
PTPN4-212ENST00000488896 ABTB2Q8N961 1025 aa9.43□□□□□ -0.9
PTPN4-212ENST00000488896 JPH1Q9HDC5 661 aaPredicted RBP9.43□□□□□ -0.9
PTPN4-212ENST00000488896 UBAP1LF5GYI3 381 aa9.42□□□□□ -0.9
PTPN4-212ENST00000488896 MAP3K6O95382 1288 aa9.42□□□□□ -0.9
PTPN4-212ENST00000488896 PSAPL1Q6NUJ1 521 aa9.42□□□□□ -0.9
PTPN4-212ENST00000488896 HELQQ8TDG4 1101 aa9.42□□□□□ -0.9
PTPN4-212ENST00000488896 NOP53Q9NZM5 478 aaKnown RBP9.42□□□□□ -0.9
PTPN4-212ENST00000488896 NAGPAQ9UK23 515 aa9.42□□□□□ -0.9
PTPN4-212ENST00000488896 KRBA1A5PL33 1030 aa9.41□□□□□ -0.9
PTPN4-212ENST00000488896 ZBTB42B2RXF5 422 aa9.41□□□□□ -0.9
PTPN4-212ENST00000488896 PHLDB3Q6NSJ2 640 aa9.41□□□□□ -0.9
PTPN4-212ENST00000488896 FAM13BQ9NYF5 915 aa9.41□□□□□ -0.9
PTPN4-212ENST00000488896 MMP20O60882 483 aa9.4□□□□□ -0.9
PTPN4-212ENST00000488896 LILRB5O75023 590 aa9.4□□□□□ -0.9
PTPN4-212ENST00000488896 ABL1P00519 1130 aa9.4□□□□□ -0.9
PTPN4-212ENST00000488896 EGFRP00533 1210 aa9.4□□□□□ -0.9
PTPN4-212ENST00000488896 PLA2G4EQ3MJ16 856 aa9.4□□□□□ -0.9
PTPN4-212ENST00000488896 C20orf204Q6ZNR8 217 aa9.4□□□□□ -0.9
PTPN4-212ENST00000488896 C11orf16Q9NQ32 467 aa9.4□□□□□ -0.9
PTPN4-212ENST00000488896 ANO2Q9NQ90 1003 aa9.4□□□□□ -0.9
PTPN4-212ENST00000488896 FAM229AH3BQW9 127 aa9.39□□□□□ -0.91
PTPN4-212ENST00000488896 RGS9O75916 674 aaPredicted RBP9.39□□□□□ -0.91
PTPN4-212ENST00000488896 MPSTP25325 297 aa9.39□□□□□ -0.91
PTPN4-212ENST00000488896 ARID4AP29374 1257 aaPredicted RBP9.39□□□□□ -0.91
PTPN4-212ENST00000488896 RETREG2Q8NC44 543 aa9.39□□□□□ -0.91
PTPN4-212ENST00000488896 NSUN5Q96P11 429 aaKnown RBP9.39□□□□□ -0.91
PTPN4-212ENST00000488896 TLR7Q9NYK1 1049 aaKnown RBP9.39□□□□□ -0.91
PTPN4-212ENST00000488896 USTQ9Y2C2 406 aa9.39□□□□□ -0.91
PTPN4-212ENST00000488896 J3QW42 95 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 PSAPP07602 524 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 EIF2AK2P19525 551 aaKnown RBP9.38□□□□□ -0.91
PTPN4-212ENST00000488896 DNM1Q05193 864 aaKnown RBP9.38□□□□□ -0.91
PTPN4-212ENST00000488896 AAMPQ13685 434 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 PCSK7Q16549 785 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 ELMSAN1Q6PJG2 1045 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 NLRP13Q86W25 1043 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 TRPM4Q8TD43 1214 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 EDEM1Q92611 657 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 NUDT16Q96DE0 195 aaKnown RBP9.38□□□□□ -0.91
PTPN4-212ENST00000488896 MTMR7Q9Y216 660 aa9.38□□□□□ -0.91
PTPN4-212ENST00000488896 GPLD1P80108 840 aa9.37□□□□□ -0.91
PTPN4-212ENST00000488896 PLAURQ03405 335 aa9.37□□□□□ -0.91
PTPN4-212ENST00000488896 ZNF211Q13398 564 aaPredicted RBP9.37□□□□□ -0.91
PTPN4-212ENST00000488896 COL9A3Q14050 684 aaPredicted RBP9.37□□□□□ -0.91
PTPN4-212ENST00000488896 NOM1Q5C9Z4 860 aaKnown RBP9.37□□□□□ -0.91
PTPN4-212ENST00000488896 PERM1Q5SV97 790 aa9.37□□□□□ -0.91
PTPN4-212ENST00000488896 TRAPPC3LQ5T215 181 aa9.37□□□□□ -0.91
PTPN4-212ENST00000488896 PRDM6Q9NQX0 595 aa9.37□□□□□ -0.91
PTPN4-212ENST00000488896 FNDC3AQ9Y2H6 1198 aaKnown RBP9.37□□□□□ -0.91
PTPN4-212ENST00000488896 ITGB2P05107 769 aa9.36□□□□□ -0.91
PTPN4-212ENST00000488896 NID1P14543 1247 aa9.36□□□□□ -0.91
PTPN4-212ENST00000488896 SPDYE3A6NKU9 549 aa9.35□□□□□ -0.91
PTPN4-212ENST00000488896 EIF1AXP47813 144 aaKnown RBP9.35□□□□□ -0.91
PTPN4-212ENST00000488896 AFF1P51825 1210 aaKnown RBP9.35□□□□□ -0.91
PTPN4-212ENST00000488896 NRLP54845 237 aa9.35□□□□□ -0.91
PTPN4-212ENST00000488896 PRRT3Q5FWE3 981 aa9.35□□□□□ -0.91
PTPN4-212ENST00000488896 TTC39BQ5VTQ0 682 aaPredicted RBP9.35□□□□□ -0.91
PTPN4-212ENST00000488896 ALYREFQ86V81 257 aaKnown RBP9.35□□□□□ -0.91
PTPN4-212ENST00000488896 LPIN3Q9BQK8 851 aa9.35□□□□□ -0.91
PTPN4-212ENST00000488896 SMG9Q9H0W8 520 aaKnown RBP9.35□□□□□ -0.91
PTPN4-212ENST00000488896 TRIM28Q13263 835 aaKnown RBP9.34□□□□□ -0.91
PTPN4-212ENST00000488896 C8orf34Q49A92 452 aa9.34□□□□□ -0.91
PTPN4-212ENST00000488896 LOC102724428A0A0B4J2F2 783 aa9.33□□□□□ -0.92
PTPN4-212ENST00000488896 A6NHS1 94 aa9.33□□□□□ -0.92
PTPN4-212ENST00000488896 MSTNO14793 375 aa9.33□□□□□ -0.92
PTPN4-212ENST00000488896 GHRHP01286 108 aa9.33□□□□□ -0.92
PTPN4-212ENST00000488896 SIK1P57059 783 aa9.33□□□□□ -0.92
PTPN4-212ENST00000488896 B4GALNT3Q6L9W6 998 aa9.33□□□□□ -0.92
PTPN4-212ENST00000488896 ZNF438Q7Z4V0 828 aa9.33□□□□□ -0.92
PTPN4-212ENST00000488896 DMRTC2Q8IXT2 367 aaPredicted RBP9.33□□□□□ -0.92
PTPN4-212ENST00000488896 TTC16Q8NEE8 873 aa9.33□□□□□ -0.92
PTPN4-212ENST00000488896 C1QTNF9BB2RNN3 333 aa9.32□□□□□ -0.92
PTPN4-212ENST00000488896 SPATA31C1P0DKV0 1188 aa9.32□□□□□ -0.92
PTPN4-212ENST00000488896 PCSK2P16519 638 aa9.32□□□□□ -0.92
PTPN4-212ENST00000488896 SPOCK3Q9BQ16 436 aa9.32□□□□□ -0.92
PTPN4-212ENST00000488896 TMEM63CQ9P1W3 806 aa9.32□□□□□ -0.92
PTPN4-212ENST00000488896 IGHA1P01876 353 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 PDGFAP04085 211 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 CHRNA4P43681 627 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 SERPINB4P48594 390 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 FKBP4Q02790 459 aaKnown RBP eCLIP9.31□□□□□ -0.92
PTPN4-212ENST00000488896 CD163Q86VB7 1156 aa9.31□□□□□ -0.92
PTPN4-212ENST00000488896 OR13H1Q8NG92 308 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms