RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MCTP1Q6DN14 999 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 SHISA2Q6UWI4 295 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 BTLAQ7Z6A9 289 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 TXNRD3Q86VQ6 643 aa6.83□□□□□ -1.32
VPS50-216ENST00000484954 DMGDHQ9UI17 866 aaKnown RBP6.83□□□□□ -1.32
VPS50-216ENST00000484954 COBLO75128 1261 aa6.82□□□□□ -1.32
VPS50-216ENST00000484954 ADH7P40394 386 aa6.82□□□□□ -1.32
VPS50-216ENST00000484954 CAPN12Q6ZSI9 719 aa6.82□□□□□ -1.32
VPS50-216ENST00000484954 C14orf37Q86TY3 774 aa6.82□□□□□ -1.32
VPS50-216ENST00000484954 PRDM6Q9NQX0 595 aa6.82□□□□□ -1.32
VPS50-216ENST00000484954 ANKIB1Q9P2G1 1089 aa6.82□□□□□ -1.32
VPS50-216ENST00000484954 SERPINA10Q9UK55 444 aa6.82□□□□□ -1.32
VPS50-216ENST00000484954 LRFN2Q9ULH4 789 aa6.82□□□□□ -1.32
VPS50-216ENST00000484954 FOXO3O43524 673 aa6.81□□□□□ -1.32
VPS50-216ENST00000484954 SPEM2Q0P670 501 aa6.81□□□□□ -1.32
VPS50-216ENST00000484954 DGKZQ13574 1117 aa6.81□□□□□ -1.32
VPS50-216ENST00000484954 PBXIP1Q96AQ6 731 aa6.81□□□□□ -1.32
VPS50-216ENST00000484954 A0A0A0MRY4 1105 aa6.8□□□□□ -1.32
VPS50-216ENST00000484954 TGFBR3LH3BV60 316 aa6.8□□□□□ -1.32
VPS50-216ENST00000484954 KCNQ4P56696 695 aa6.8□□□□□ -1.32
VPS50-216ENST00000484954 SWI5Q1ZZU3 235 aa6.8□□□□□ -1.32
VPS50-216ENST00000484954 TNFRSF25Q93038 417 aa6.8□□□□□ -1.32
VPS50-216ENST00000484954 KCNH4Q9UQ05 1017 aa6.8□□□□□ -1.32
VPS50-216ENST00000484954 NRG1Q02297 640 aaPredicted RBP6.79□□□□□ -1.32
VPS50-216ENST00000484954 MKNK1Q9BUB5 465 aa6.79□□□□□ -1.32
VPS50-216ENST00000484954 SAP130Q9H0E3 1048 aa6.79□□□□□ -1.32
VPS50-216ENST00000484954 USP21Q9UK80 565 aa6.79□□□□□ -1.32
VPS50-216ENST00000484954 ELNP15502 786 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 IDH3AP50213 366 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 TBC1D8BQ0IIM8 1120 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 FAM26DQ5JW98 314 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 COX20Q5RI15 118 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 IER5Q5VY09 327 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 C20orf204Q6ZNR8 217 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 VTI1AQ96AJ9 217 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 LENG1Q96BZ8 264 aaPredicted RBP6.78□□□□□ -1.32
VPS50-216ENST00000484954 MYO19Q96H55 970 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 KRTAP4-11Q9BYQ6 195 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 USP20Q9Y2K6 914 aa6.78□□□□□ -1.32
VPS50-216ENST00000484954 LILRB5O75023 590 aa6.77□□□□□ -1.33
VPS50-216ENST00000484954 INPP5BP32019 993 aa6.77□□□□□ -1.33
VPS50-216ENST00000484954 BHMTQ93088 406 aa6.77□□□□□ -1.33
VPS50-216ENST00000484954 CXXC1Q9P0U4 656 aaPredicted RBP6.77□□□□□ -1.33
VPS50-216ENST00000484954 PAX4O43316 350 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 SCNN1AP37088 669 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 RAC1P63000 192 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 HIF1AQ16665 826 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 C11orf91Q3C1V1 193 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 NUDT8Q8WV74 236 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 GSX2Q9BZM3 304 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 PCMTD2Q9NV79 361 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 RNF112Q9ULX5 631 aa6.76□□□□□ -1.33
VPS50-216ENST00000484954 OPLAHO14841 1288 aa6.75□□□□□ -1.33
VPS50-216ENST00000484954 MICAL2O94851 1124 aa6.75□□□□□ -1.33
VPS50-216ENST00000484954 NAA30Q147X3 362 aaPredicted RBP6.75□□□□□ -1.33
VPS50-216ENST00000484954 CLP1Q92989 425 aaKnown RBP6.75□□□□□ -1.33
VPS50-216ENST00000484954 IFT43Q96FT9 208 aa6.75□□□□□ -1.33
VPS50-216ENST00000484954 SSBP4Q9BWG4 385 aaPredicted RBP6.75□□□□□ -1.33
VPS50-216ENST00000484954 IGFLR1Q9H665 355 aa6.75□□□□□ -1.33
VPS50-216ENST00000484954 CARNS1A5YM72 827 aa6.74□□□□□ -1.33
VPS50-216ENST00000484954 TNFRSF10BO14763 440 aa6.74□□□□□ -1.33
VPS50-216ENST00000484954 TXKP42681 527 aa6.74□□□□□ -1.33
VPS50-216ENST00000484954 NEUROD1Q13562 356 aa6.74□□□□□ -1.33
VPS50-216ENST00000484954 ETFBKMTQ8IXQ9 262 aa6.74□□□□□ -1.33
VPS50-216ENST00000484954 KRTAP4-5Q9BYR2 181 aa6.74□□□□□ -1.33
VPS50-216ENST00000484954 JPH1Q9HDC5 661 aaPredicted RBP6.74□□□□□ -1.33
VPS50-216ENST00000484954 COL17A1Q9UMD9 1497 aaPredicted RBP6.73□□□□□ -1.33
VPS50-216ENST00000484954 YBX3P16989 372 aaKnown RBP eCLIP6.73□□□□□ -1.33
VPS50-216ENST00000484954 NFKB1P19838 968 aa6.73□□□□□ -1.33
VPS50-216ENST00000484954 SSTR4P31391 388 aa6.73□□□□□ -1.33
VPS50-216ENST00000484954 KRT25Q7Z3Z0 450 aa6.73□□□□□ -1.33
VPS50-216ENST00000484954 TREML1Q86YW5 311 aa6.73□□□□□ -1.33
VPS50-216ENST00000484954 DMRTC2Q8IXT2 367 aaPredicted RBP6.73□□□□□ -1.33
VPS50-216ENST00000484954 ZFATQ9P243 1243 aa6.73□□□□□ -1.33
VPS50-216ENST00000484954 SEPT3Q9UH03 358 aa6.73□□□□□ -1.33
VPS50-216ENST00000484954 TMEM88BA6NKF7 163 aa6.72□□□□□ -1.33
VPS50-216ENST00000484954 ARSDP51689 593 aa6.72□□□□□ -1.33
VPS50-216ENST00000484954 CCINQ13939 588 aa6.72□□□□□ -1.33
VPS50-216ENST00000484954 C16orf46Q6P387 395 aa6.72□□□□□ -1.33
VPS50-216ENST00000484954 UBE2OQ9C0C9 1292 aaKnown RBP6.72□□□□□ -1.33
VPS50-216ENST00000484954 NAGPAQ9UK23 515 aa6.72□□□□□ -1.33
VPS50-216ENST00000484954 ATP2B4P23634 1241 aa6.71□□□□□ -1.34
VPS50-216ENST00000484954 TARSP26639 723 aaKnown RBP6.71□□□□□ -1.34
VPS50-216ENST00000484954 IREB2P48200 963 aaKnown RBP6.71□□□□□ -1.34
VPS50-216ENST00000484954 RGL4Q8IZJ4 473 aa6.71□□□□□ -1.34
VPS50-216ENST00000484954 FMR1NBQ8N0W7 255 aaPredicted RBP6.71□□□□□ -1.34
VPS50-216ENST00000484954 RTCBQ9Y3I0 505 aaKnown RBP6.71□□□□□ -1.34
VPS50-216ENST00000484954 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.71□□□□□ -1.34
VPS50-216ENST00000484954 SUPT5HO00267 1087 aaKnown RBP6.7□□□□□ -1.34
VPS50-216ENST00000484954 ZBTB39O15060 712 aa6.7□□□□□ -1.34
VPS50-216ENST00000484954 SASH3O75995 380 aa6.7□□□□□ -1.34
VPS50-216ENST00000484954 FZD5Q13467 585 aa6.7□□□□□ -1.34
VPS50-216ENST00000484954 WFDC12Q8WWY7 111 aa6.7□□□□□ -1.34
VPS50-216ENST00000484954 COL26A1Q96A83 441 aa6.7□□□□□ -1.34
VPS50-216ENST00000484954 PNMA5Q96PV4 448 aa6.7□□□□□ -1.34
VPS50-216ENST00000484954 FMNL2Q96PY5 1086 aa6.7□□□□□ -1.34
VPS50-216ENST00000484954 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS50-216ENST00000484954 DNAJB12Q9NXW2 375 aaKnown RBP6.7□□□□□ -1.34
VPS50-216ENST00000484954 SLC6A14Q9UN76 642 aa6.7□□□□□ -1.34
VPS50-216ENST00000484954 KCNMB2Q9Y691 235 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms