RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CEP85Q6P2H3 762 aa15.28■□□□□ 0.04
SDC1-206ENST00000482879 RPAP2Q8IXW5 612 aaPredicted RBP15.28■□□□□ 0.04
SDC1-206ENST00000482879 TAF1P21675 1872 aa15.28■□□□□ 0.04
SDC1-206ENST00000482879 KIF13BQ9NQT8 1826 aa15.28■□□□□ 0.04
SDC1-206ENST00000482879 C10orf71Q711Q0 1435 aa15.27■□□□□ 0.04
SDC1-206ENST00000482879 KLRG2A4D1S0 409 aaPredicted RBP15.27■□□□□ 0.04
SDC1-206ENST00000482879 SRGAP3O43295 1099 aa15.27■□□□□ 0.04
SDC1-206ENST00000482879 MTX1Q13505 466 aa15.27■□□□□ 0.04
SDC1-206ENST00000482879 ERICH6BQ5W0A0 696 aa15.27■□□□□ 0.04
SDC1-206ENST00000482879 KLHL34Q8N239 644 aa15.27■□□□□ 0.04
SDC1-206ENST00000482879 GREM2Q9H772 168 aa15.27■□□□□ 0.04
SDC1-206ENST00000482879 PPP1R1BQ9UD71 204 aaPredicted RBP15.27■□□□□ 0.04
SDC1-206ENST00000482879 PNMA6EA0A0J9YXQ4 647 aa15.26■□□□□ 0.03
SDC1-206ENST00000482879 H0YIN7 160 aa15.26■□□□□ 0.03
SDC1-206ENST00000482879 IFIT5Q13325 482 aaKnown RBP15.26■□□□□ 0.03
SDC1-206ENST00000482879 CCDC57Q2TAC2 916 aa15.26■□□□□ 0.03
SDC1-206ENST00000482879 FAM161AQ3B820 660 aa15.26■□□□□ 0.03
SDC1-206ENST00000482879 CRY2Q49AN0 593 aa15.26■□□□□ 0.03
SDC1-206ENST00000482879 C2CD5Q86YS7 1000 aa15.26■□□□□ 0.03
SDC1-206ENST00000482879 RPGRQ92834 1020 aaKnown RBP15.26■□□□□ 0.03
SDC1-206ENST00000482879 PDZRN3Q9UPQ7 1066 aa15.26■□□□□ 0.03
SDC1-206ENST00000482879 ANKRD18BA2A2Z9 1011 aa15.25■□□□□ 0.03
SDC1-206ENST00000482879 HMMRO75330 724 aa15.25■□□□□ 0.03
SDC1-206ENST00000482879 ITGA6P23229 1130 aa15.25■□□□□ 0.03
SDC1-206ENST00000482879 DDX46Q7L014 1031 aaKnown RBP15.25■□□□□ 0.03
SDC1-206ENST00000482879 SIRT2Q8IXJ6 389 aa15.25■□□□□ 0.03
SDC1-206ENST00000482879 RBM17Q96I25 401 aaKnown RBP15.25■□□□□ 0.03
SDC1-206ENST00000482879 SEC31BQ9NQW1 1179 aa15.25■□□□□ 0.03
SDC1-206ENST00000482879 CD2APQ9Y5K6 639 aa15.25■□□□□ 0.03
SDC1-206ENST00000482879 RTL9Q8NET4 1388 aa15.24■□□□□ 0.03
SDC1-206ENST00000482879 COL11A2P13942 1736 aaPredicted RBP15.24■□□□□ 0.03
SDC1-206ENST00000482879 SRGNP10124 158 aa15.24■□□□□ 0.03
SDC1-206ENST00000482879 NPR1P16066 1061 aa15.24■□□□□ 0.03
SDC1-206ENST00000482879 CHRNA5P30532 468 aa15.24■□□□□ 0.03
SDC1-206ENST00000482879 POLA2Q14181 598 aa15.24■□□□□ 0.03
SDC1-206ENST00000482879 TAF7LQ5H9L4 462 aa15.24■□□□□ 0.03
SDC1-206ENST00000482879 SSH3Q8TE77 659 aa15.24■□□□□ 0.03
SDC1-206ENST00000482879 ZNF622Q969S3 477 aaKnown RBP eCLIP15.24■□□□□ 0.03
SDC1-206ENST00000482879 MASTLQ96GX5 879 aa15.24■□□□□ 0.03
SDC1-206ENST00000482879 CACNA1SQ13698 1873 aa15.23■□□□□ 0.03
SDC1-206ENST00000482879 SPEF2Q9C093 1822 aa15.23■□□□□ 0.03
SDC1-206ENST00000482879 HOXA10P31260 410 aaPredicted RBP15.23■□□□□ 0.03
SDC1-206ENST00000482879 RFX5P48382 616 aaPredicted RBP15.23■□□□□ 0.03
SDC1-206ENST00000482879 TGFB2P61812 414 aa15.23■□□□□ 0.03
SDC1-206ENST00000482879 ZNF594Q96JF6 807 aaPredicted RBP15.23■□□□□ 0.03
SDC1-206ENST00000482879 CRAMP1Q96RY5 1269 aa15.23■□□□□ 0.03
SDC1-206ENST00000482879 CDC5LQ99459 802 aaKnown RBP15.23■□□□□ 0.03
SDC1-206ENST00000482879 A0A0G2JLW4 131 aa15.22■□□□□ 0.03
SDC1-206ENST00000482879 DPEP1P16444 411 aa15.22■□□□□ 0.03
SDC1-206ENST00000482879 STYK1Q6J9G0 422 aa15.22■□□□□ 0.03
SDC1-206ENST00000482879 KLHDC4Q8TBB5 520 aa15.22■□□□□ 0.03
SDC1-206ENST00000482879 RWDD1Q9H446 243 aaPredicted RBP15.22■□□□□ 0.03
SDC1-206ENST00000482879 PA2G4Q9UQ80 394 aaKnown RBP15.22■□□□□ 0.03
SDC1-206ENST00000482879 ALDH1B1P30837 517 aa15.21■□□□□ 0.03
SDC1-206ENST00000482879 IGHMBP2P38935 993 aaKnown RBP15.21■□□□□ 0.03
SDC1-206ENST00000482879 RPS8P62241 208 aaKnown RBP15.21■□□□□ 0.03
SDC1-206ENST00000482879 PTPN12Q05209 780 aaKnown RBP15.21■□□□□ 0.03
SDC1-206ENST00000482879 HDAC1Q13547 482 aaPredicted RBP15.21■□□□□ 0.03
SDC1-206ENST00000482879 GRAPQ13588 217 aa15.21■□□□□ 0.03
SDC1-206ENST00000482879 ANKRD18AQ8IVF6 992 aa15.21■□□□□ 0.03
SDC1-206ENST00000482879 GRAPLQ8TC17 118 aaPredicted RBP15.21■□□□□ 0.03
SDC1-206ENST00000482879 CELF1Q92879 486 aaKnown RBP15.21■□□□□ 0.03
SDC1-206ENST00000482879 PPP4R2Q9NY27 417 aa15.21■□□□□ 0.03
SDC1-206ENST00000482879 DLEC1Q9Y238 1755 aa15.21■□□□□ 0.02
SDC1-206ENST00000482879 SURF6O75683 361 aaKnown RBP15.2■□□□□ 0.02
SDC1-206ENST00000482879 CNKSR1Q969H4 720 aa15.2■□□□□ 0.02
SDC1-206ENST00000482879 MPHOSPH8Q99549 860 aa15.2■□□□□ 0.02
SDC1-206ENST00000482879 FHDC1Q9C0D6 1143 aaPredicted RBP15.2■□□□□ 0.02
SDC1-206ENST00000482879 SIL1Q9H173 461 aa15.2■□□□□ 0.02
SDC1-206ENST00000482879 COPRSQ9NQ92 184 aa15.2■□□□□ 0.02
SDC1-206ENST00000482879 KIAA1551Q9HCM1 1747 aa15.2■□□□□ 0.02
SDC1-206ENST00000482879 BBOX1O75936 387 aa15.19■□□□□ 0.02
SDC1-206ENST00000482879 IGHDP01880 384 aa15.19■□□□□ 0.02
SDC1-206ENST00000482879 KCNA3P22001 575 aa15.19■□□□□ 0.02
SDC1-206ENST00000482879 G3BP1Q13283 466 aaKnown RBP eCLIP15.19■□□□□ 0.02
SDC1-206ENST00000482879 LDHAL6AQ6ZMR3 332 aa15.19■□□□□ 0.02
SDC1-206ENST00000482879 CNNM1Q9NRU3 951 aa15.19■□□□□ 0.02
SDC1-206ENST00000482879 SLX4Q8IY92 1834 aa15.19■□□□□ 0.02
SDC1-206ENST00000482879 COL4A1P02462 1669 aa15.19■□□□□ 0.02
SDC1-206ENST00000482879 EYA2O00167 538 aa15.18■□□□□ 0.02
SDC1-206ENST00000482879 OS9Q13438 667 aaPredicted RBP15.18■□□□□ 0.02
SDC1-206ENST00000482879 TTLL6Q8N841 843 aa15.18■□□□□ 0.02
SDC1-206ENST00000482879 NLGN2Q8NFZ4 835 aa15.18■□□□□ 0.02
SDC1-206ENST00000482879 CCDC136Q96JN2 1154 aa15.18■□□□□ 0.02
SDC1-206ENST00000482879 PUS3Q9BZE2 481 aaKnown RBP15.18■□□□□ 0.02
SDC1-206ENST00000482879 DCTPP1Q9H773 170 aa15.18■□□□□ 0.02
SDC1-206ENST00000482879 BSDC1Q9NW68 430 aaPredicted RBP15.18■□□□□ 0.02
SDC1-206ENST00000482879 PIM2Q9P1W9 311 aa15.18■□□□□ 0.02
SDC1-206ENST00000482879 NOP58Q9Y2X3 529 aaKnown RBP15.18■□□□□ 0.02
SDC1-206ENST00000482879 GTF3C3Q9Y5Q9 886 aa15.18■□□□□ 0.02
SDC1-206ENST00000482879 LRP5O75197 1615 aa15.17■□□□□ 0.02
SDC1-206ENST00000482879 BRCA1P38398 1863 aaKnown RBP15.17■□□□□ 0.02
SDC1-206ENST00000482879 LRRC24Q50LG9 513 aa15.17■□□□□ 0.02
SDC1-206ENST00000482879 HSP90AB4PQ58FF6 505 aa15.17■□□□□ 0.02
SDC1-206ENST00000482879 SYT17Q9BSW7 474 aa15.17■□□□□ 0.02
SDC1-206ENST00000482879 FBXO3Q9UK99 471 aa15.17■□□□□ 0.02
SDC1-206ENST00000482879 EXOC6BQ9Y2D4 811 aa15.17■□□□□ 0.02
SDC1-206ENST00000482879 PPEF1O14829 653 aaPredicted RBP15.16■□□□□ 0.02
SDC1-206ENST00000482879 CIAO1O76071 339 aa15.16■□□□□ 0.02
SDC1-206ENST00000482879 B4GALNT3Q6L9W6 998 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms