RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 PNMA3Q9UL41 463 aa5.53□□□□□ -1.52
VPS13D-208ENST00000481484 RIC1Q4ADV7 1423 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 SENP3-EIF4A1A0A087X0R7 540 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 POLRMTO00411 1230 aaKnown RBP5.52□□□□□ -1.53
VPS13D-208ENST00000481484 U2SURPO15042 1029 aaKnown RBP5.52□□□□□ -1.53
VPS13D-208ENST00000481484 NEFMP07197 916 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 HMOX1P09601 288 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 CYP19A1P11511 503 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-208ENST00000481484 MTHFSDQ2M296 383 aaKnown RBP5.52□□□□□ -1.53
VPS13D-208ENST00000481484 SMYD5Q6GMV2 418 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 DNAJC10Q8IXB1 793 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 LRCH3Q96II8 777 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 FMNL2Q96PY5 1086 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 WBP1LQ9NX94 342 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 PIM2Q9P1W9 311 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 TSR3Q9UJK0 312 aaKnown RBP5.52□□□□□ -1.53
VPS13D-208ENST00000481484 SCN4AP35499 1836 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 IBTKQ9P2D0 1353 aaPredicted RBP5.52□□□□□ -1.53
VPS13D-208ENST00000481484 LAMB2P55268 1798 aa5.52□□□□□ -1.53
VPS13D-208ENST00000481484 KDM2BQ8NHM5 1336 aa5.51□□□□□ -1.53
VPS13D-208ENST00000481484 HTATSF1O43719 755 aaKnown RBP5.51□□□□□ -1.53
VPS13D-208ENST00000481484 PRKAR2BP31323 418 aa5.51□□□□□ -1.53
VPS13D-208ENST00000481484 IL6STP40189 918 aaPredicted RBP5.51□□□□□ -1.53
VPS13D-208ENST00000481484 DDR1Q08345 913 aa5.51□□□□□ -1.53
VPS13D-208ENST00000481484 DALRD3Q5D0E6 543 aaKnown RBP5.51□□□□□ -1.53
VPS13D-208ENST00000481484 INTS5Q6P9B9 1019 aaKnown RBP5.51□□□□□ -1.53
VPS13D-208ENST00000481484 ZNF790Q6PG37 636 aa5.51□□□□□ -1.53
VPS13D-208ENST00000481484 RTF1Q92541 710 aaKnown RBP5.51□□□□□ -1.53
VPS13D-208ENST00000481484 RSPH6AQ9H0K4 717 aa5.51□□□□□ -1.53
VPS13D-208ENST00000481484 PNNQ9H307 717 aaKnown RBP5.51□□□□□ -1.53
VPS13D-208ENST00000481484 BCS1LQ9Y276 419 aa5.51□□□□□ -1.53
VPS13D-208ENST00000481484 ZNF652Q9Y2D9 606 aa5.51□□□□□ -1.53
VPS13D-208ENST00000481484 ZBTB1Q9Y2K1 713 aa5.51□□□□□ -1.53
VPS13D-208ENST00000481484 FCHSD2O94868 740 aa5.5□□□□□ -1.53
VPS13D-208ENST00000481484 DPEP1P16444 411 aa5.5□□□□□ -1.53
VPS13D-208ENST00000481484 EIF5P55010 431 aaKnown RBP5.5□□□□□ -1.53
VPS13D-208ENST00000481484 SOGA3Q5TF21 947 aa5.5□□□□□ -1.53
VPS13D-208ENST00000481484 USPL1Q5W0Q7 1092 aa5.5□□□□□ -1.53
VPS13D-208ENST00000481484 SAMD7Q7Z3H4 446 aa5.5□□□□□ -1.53
VPS13D-208ENST00000481484 PNISRQ8TF01 805 aaKnown RBP5.5□□□□□ -1.53
VPS13D-208ENST00000481484 HPS5Q9UPZ3 1129 aa5.5□□□□□ -1.53
VPS13D-208ENST00000481484 DDX60Q8IY21 1712 aaKnown RBP5.5□□□□□ -1.53
VPS13D-208ENST00000481484 PCNTO95613 3336 aa5.5□□□□□ -1.53
VPS13D-208ENST00000481484 ERBB4Q15303 1308 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 MAPK8IP3Q9UPT6 1336 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 SLX4Q8IY92 1834 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 U2AF1L5P0DN76 240 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-208ENST00000481484 HSPA6P17066 643 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 PPP2R1AP30153 589 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 TM4SF1P30408 202 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 PPP4CP60510 307 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 ST5P78524 1137 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 U2AF1Q01081 240 aaKnown RBP eCLIP5.49□□□□□ -1.53
VPS13D-208ENST00000481484 SLC39A6Q13433 755 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 NFIXQ14938 502 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 RBM26Q5T8P6 1007 aaKnown RBP5.49□□□□□ -1.53
VPS13D-208ENST00000481484 CLEC4GQ6UXB4 293 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 CNBD1Q8NA66 436 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 ZNF496Q96IT1 587 aaPredicted RBP5.49□□□□□ -1.53
VPS13D-208ENST00000481484 LGR6Q9HBX8 967 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 SRP68Q9UHB9 627 aaKnown RBP5.49□□□□□ -1.53
VPS13D-208ENST00000481484 CACNA1FO60840 1977 aa5.49□□□□□ -1.53
VPS13D-208ENST00000481484 LTBP3Q9NS15 1303 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 A0A0G2JLW4 131 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 BTBD11A6QL63 1104 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 H0YIN7 160 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 TOMM70O94826 608 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 ITGBL1O95965 494 aaPredicted RBP5.48□□□□□ -1.53
VPS13D-208ENST00000481484 SNRPA1P09661 255 aaKnown RBP5.48□□□□□ -1.53
VPS13D-208ENST00000481484 PDE6BP35913 854 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 APLP1P51693 650 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 LMOD3Q0VAK6 560 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 FSTL1Q12841 308 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 C16orf71Q8IYS4 520 aaPredicted RBP5.48□□□□□ -1.53
VPS13D-208ENST00000481484 TTLL6Q8N841 843 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 RBM46Q8TBY0 533 aaKnown RBP5.48□□□□□ -1.53
VPS13D-208ENST00000481484 BRIP1Q9BX63 1249 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 ADGRG1Q9Y653 693 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 LRRC37AA6NMS7 1700 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 RNF123Q5XPI4 1314 aa5.48□□□□□ -1.53
VPS13D-208ENST00000481484 NPHP1O15259 732 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 CAMTA2O94983 1202 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 SERPINB2P05120 415 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 LMNB1P20700 586 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 KCNA3P22001 575 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 CANXP27824 592 aaKnown RBP5.47□□□□□ -1.53
VPS13D-208ENST00000481484 HIC1Q14526 733 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 RALBP1Q15311 655 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 C9orf131Q5VYM1 1079 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 ARHGAP27Q6ZUM4 889 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 SMIM5Q71RC9 77 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 IL17REQ8NFR9 667 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 CNKSR1Q969H4 720 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 BABAM1Q9NWV8 329 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 RNF181Q9P0P0 153 aa5.47□□□□□ -1.53
VPS13D-208ENST00000481484 MYH3P11055 1940 aa5.46□□□□□ -1.53
VPS13D-208ENST00000481484 GPR37O15354 613 aa5.46□□□□□ -1.54
VPS13D-208ENST00000481484 NFE2L2Q16236 605 aa5.46□□□□□ -1.54
VPS13D-208ENST00000481484 SWT1Q5T5J6 900 aaKnown RBP5.46□□□□□ -1.54
VPS13D-208ENST00000481484 STYK1Q6J9G0 422 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms