RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 DLC1Q96QB1 1528 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 BRCA2P51587 3418 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 PTMSP20962 102 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 IBSPP21815 317 aaPredicted RBP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 GTF2E1P29083 439 aaPredicted RBP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 KRT85P78386 507 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 NMIQ13287 307 aaPredicted RBP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 MARCH10Q8NA82 808 aaPredicted RBP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 KIF2CQ99661 725 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 TMOD3Q9NYL9 352 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 NRBP1Q9UHY1 535 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 POLR3GO15318 223 aaPredicted RBP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 RRP9O43818 475 aaKnown RBP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 U2AF2P26368 475 aaKnown RBP eCLIP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 CDC37L1Q7L3B6 337 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 GJB4Q9NTQ9 266 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 CGNQ9P2M7 1197 aaKnown RBP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 CCDC192P0DO97 292 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 ERCC3P19447 782 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 STK38Q15208 465 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 COPS6Q7L5N1 327 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 HINFPQ9BQA5 517 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 FAM135BQ49AJ0 1406 aa5.89□□□□□ -1.47
CCDC39-204ENST00000476379 ARHGEF28Q8N1W1 1705 aaKnown RBP5.89□□□□□ -1.47
CCDC39-204ENST00000476379 STRCP1A6NGW2 1772 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 NINLQ9Y2I6 1382 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 SOS2Q07890 1332 aaPredicted RBP5.88□□□□□ -1.47
CCDC39-204ENST00000476379 A0A087WZG4 1122 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 KINO60870 393 aaKnown RBP5.88□□□□□ -1.47
CCDC39-204ENST00000476379 CLSTN1O94985 981 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 DNA2P51530 1060 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 FKBP15Q5T1M5 1219 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 HOMEZQ8IX15 550 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 UIMC1Q96RL1 719 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 CWC22Q9HCG8 908 aaKnown RBP5.88□□□□□ -1.47
CCDC39-204ENST00000476379 ZC3H13Q5T200 1668 aaKnown RBP5.88□□□□□ -1.47
CCDC39-204ENST00000476379 TTC21AQ8NDW8 1320 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 APBA3O96018 575 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 CT47B1P0C2W7 299 aaPredicted RBP5.88□□□□□ -1.47
CCDC39-204ENST00000476379 GOLGA8FQ08AF8 430 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 GOLGA8DPQ0D2H9 430 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 NOLC1Q14978 699 aaKnown RBP eCLIP5.88□□□□□ -1.47
CCDC39-204ENST00000476379 PDCL2Q8N4E4 241 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 PIGBQ92521 554 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 KIF1BPQ96EK5 621 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 LIMCH1Q9UPQ0 1083 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 KIF3AQ9Y496 699 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 MED14O60244 1454 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 SBNO1A3KN83 1393 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 hCG_1642624A0A1W2PR95 340 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 SNAP23O00161 211 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 ATP6V1AP38606 617 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 APOBRQ0VD83 1088 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 MAP3K11Q16584 847 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 RNF20Q5VTR2 975 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 SRRTQ9BXP5 876 aaKnown RBP5.88□□□□□ -1.47
CCDC39-204ENST00000476379 ZKSCAN5Q9Y2L8 839 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 STRCQ7RTU9 1775 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 CDC42BPGQ6DT37 1551 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 REREQ9P2R6 1566 aa5.88□□□□□ -1.47
CCDC39-204ENST00000476379 CPSF1Q10570 1443 aaKnown RBP5.88□□□□□ -1.47
CCDC39-204ENST00000476379 COBLO75128 1261 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 TPM2P07951 284 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 TNNT1P13805 278 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 LIG1P18858 919 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 ZNF165P49910 485 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 DHX8Q14562 1220 aaKnown RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 ARID5BQ14865 1188 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 SYNE3Q6ZMZ3 975 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 RALYLQ86SE5 291 aaKnown RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 MICU3Q86XE3 530 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 XAGE3Q8WTP9 111 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 SNX21Q969T3 373 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 EEF2KMTQ96G04 330 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 CLIP2Q9UDT6 1046 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 SRP68Q9UHB9 627 aaKnown RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 FSD2A1L4K1 749 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 TTLL7Q6ZT98 887 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 MYL10Q9BUA6 226 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 BICC1Q9H694 974 aaKnown RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 DDX58O95786 925 aaKnown RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 ZSCAN22P10073 491 aaPredicted RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 AAMPQ13685 434 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 AMIGO3Q86WK7 504 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 CMTR1Q8N1G2 835 aaKnown RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 ZKSCAN3Q9BRR0 538 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 USP44Q9H0E7 712 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 ABCF2Q9UG63 623 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 ZDHHC9Q9Y397 364 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 SNX14Q9Y5W7 946 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 KDM5AP29375 1690 aaKnown RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 A0A1B0GVL5 298 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 LMOD1P29536 600 aaPredicted RBP5.87□□□□□ -1.47
CCDC39-204ENST00000476379 CCDC183Q5T5S1 534 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 TAF6LQ9Y6J9 622 aa5.87□□□□□ -1.47
CCDC39-204ENST00000476379 SERPINC1P01008 464 aa5.86□□□□□ -1.47
CCDC39-204ENST00000476379 COL9A3Q14050 684 aaPredicted RBP5.86□□□□□ -1.47
CCDC39-204ENST00000476379 CSPP1Q1MSJ5 1256 aa5.86□□□□□ -1.47
CCDC39-204ENST00000476379 TRMT1LQ7Z2T5 733 aaKnown RBP5.86□□□□□ -1.47
CCDC39-204ENST00000476379 IFNL2Q8IZJ0 200 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms