RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZNF609O15014 1411 aa6.71□□□□□ -1.34
USP4-209ENST00000475873 STARD3NLO95772 234 aa6.71□□□□□ -1.34
USP4-209ENST00000475873 HOXA10P31260 410 aaPredicted RBP6.71□□□□□ -1.34
USP4-209ENST00000475873 NUTM1Q86Y26 1132 aa6.71□□□□□ -1.34
USP4-209ENST00000475873 REM2Q8IYK8 340 aaPredicted RBP6.71□□□□□ -1.34
USP4-209ENST00000475873 PTPN22Q9Y2R2 807 aa6.71□□□□□ -1.34
USP4-209ENST00000475873 PRAMEF22A3QJZ6 481 aa6.7□□□□□ -1.34
USP4-209ENST00000475873 WTIPA6NIX2 430 aaPredicted RBP6.7□□□□□ -1.34
USP4-209ENST00000475873 UBE2Q2LH0YL09 131 aa6.7□□□□□ -1.34
USP4-209ENST00000475873 COL9A1P20849 921 aa6.7□□□□□ -1.34
USP4-209ENST00000475873 MKRN3Q13064 507 aaKnown RBP6.7□□□□□ -1.34
USP4-209ENST00000475873 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.7□□□□□ -1.34
USP4-209ENST00000475873 SHISA4Q96DD7 197 aa6.7□□□□□ -1.34
USP4-209ENST00000475873 BCL2L13Q9BXK5 485 aa6.7□□□□□ -1.34
USP4-209ENST00000475873 RTFDC1Q9BY42 306 aaPredicted RBP6.7□□□□□ -1.34
USP4-209ENST00000475873 GGA3Q9NZ52 723 aa6.7□□□□□ -1.34
USP4-209ENST00000475873 SCAF8Q9UPN6 1271 aaKnown RBP6.7□□□□□ -1.34
USP4-209ENST00000475873 NIP7Q9Y221 180 aaKnown RBP eCLIP6.7□□□□□ -1.34
USP4-209ENST00000475873 STXBP5LQ9Y2K9 1186 aa6.7□□□□□ -1.34
USP4-209ENST00000475873 KIF7Q2M1P5 1343 aa6.7□□□□□ -1.34
USP4-209ENST00000475873 SIPA1L3O60292 1781 aaPredicted RBP6.69□□□□□ -1.34
USP4-209ENST00000475873 CDH23Q9H251 3354 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 H7C1D1 291 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 PSMD14O00487 310 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 PPEF1O14829 653 aaPredicted RBP6.69□□□□□ -1.34
USP4-209ENST00000475873 KCNQ3O43525 872 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 TNNT2P45379 298 aaPredicted RBP6.69□□□□□ -1.34
USP4-209ENST00000475873 KIAA2012Q0VF49 1180 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 HLFQ16534 295 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 SULT6B1Q6IMI4 303 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 CLEC4GQ6UXB4 293 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 TPTE2Q6XPS3 522 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 UBE2Q1Q7Z7E8 422 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 CD99L2Q8TCZ2 262 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 KCNQ5Q9NR82 932 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 MTMR10Q9NXD2 777 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 SCN9AQ15858 1988 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 RTL9Q8NET4 1388 aa6.69□□□□□ -1.34
USP4-209ENST00000475873 RBM26Q5T8P6 1007 aaKnown RBP6.68□□□□□ -1.34
USP4-209ENST00000475873 DEFB123Q8N688 67 aa6.68□□□□□ -1.34
USP4-209ENST00000475873 DPF2Q92785 391 aa6.68□□□□□ -1.34
USP4-209ENST00000475873 DCPSQ96C86 337 aaKnown RBP6.68□□□□□ -1.34
USP4-209ENST00000475873 CRAMP1Q96RY5 1269 aa6.68□□□□□ -1.34
USP4-209ENST00000475873 USP16Q9Y5T5 823 aa6.68□□□□□ -1.34
USP4-209ENST00000475873 ZSWIM8A7E2V4 1837 aa6.68□□□□□ -1.34
USP4-209ENST00000475873 NBPF26B4DH59 902 aa6.67□□□□□ -1.34
USP4-209ENST00000475873 IGF2BP3O00425 579 aaKnown RBP eCLIP6.67□□□□□ -1.34
USP4-209ENST00000475873 MYCP01106 439 aaPredicted RBP6.67□□□□□ -1.34
USP4-209ENST00000475873 TNIP1Q15025 636 aa6.67□□□□□ -1.34
USP4-209ENST00000475873 GRIPAP1Q4V328 841 aa6.67□□□□□ -1.34
USP4-209ENST00000475873 PRAMEF18Q5VWM3 479 aa6.67□□□□□ -1.34
USP4-209ENST00000475873 NBPF10Q6P3W6 841 aaKnown RBP6.67□□□□□ -1.34
USP4-209ENST00000475873 ZNF790Q6PG37 636 aa6.67□□□□□ -1.34
USP4-209ENST00000475873 VPS33BQ9H267 617 aa6.67□□□□□ -1.34
USP4-209ENST00000475873 ATP6V0A2Q9Y487 856 aa6.67□□□□□ -1.34
USP4-209ENST00000475873 LAMB1P07942 1786 aa6.67□□□□□ -1.34
USP4-209ENST00000475873 TAF1P21675 1872 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 COL4A1P02462 1669 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 PIEZO1Q92508 2521 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 A0A1W2PPC1 479 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 ZBTB7BO15156 539 aaPredicted RBP6.66□□□□□ -1.34
USP4-209ENST00000475873 HOXD11P31277 338 aaPredicted RBP6.66□□□□□ -1.34
USP4-209ENST00000475873 PLA2G5P39877 138 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 FKBP1BP68106 108 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 NEUROD1Q13562 356 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 MTHFSDQ2M296 383 aaKnown RBP6.66□□□□□ -1.34
USP4-209ENST00000475873 KIF4BQ2VIQ3 1234 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 SULF1Q8IWU6 871 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 TMEM106CQ9BVX2 250 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 PTCH2Q9Y6C5 1203 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 UBN2Q6ZU65 1347 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 ALPK3Q96L96 1907 aa6.66□□□□□ -1.34
USP4-209ENST00000475873 IL13P35225 146 aa6.65□□□□□ -1.34
USP4-209ENST00000475873 PTPN12Q05209 780 aaKnown RBP6.65□□□□□ -1.34
USP4-209ENST00000475873 ANGEL2Q5VTE6 544 aaKnown RBP6.65□□□□□ -1.34
USP4-209ENST00000475873 IL17REQ8NFR9 667 aa6.65□□□□□ -1.34
USP4-209ENST00000475873 DPF3Q92784 378 aa6.65□□□□□ -1.34
USP4-209ENST00000475873 RPGRQ92834 1020 aaKnown RBP6.65□□□□□ -1.34
USP4-209ENST00000475873 EFCC1Q9HA90 598 aa6.65□□□□□ -1.34
USP4-209ENST00000475873 STAP2Q9UGK3 403 aa6.65□□□□□ -1.34
USP4-209ENST00000475873 ABCC4O15439 1325 aa6.65□□□□□ -1.35
USP4-209ENST00000475873 LRRC37AA6NMS7 1700 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 LAMB2P55268 1798 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 NUP98P52948 1817 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 NCOR1O75376 2440 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 CACNA1AO00555 2505 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 CRHR2Q13324 411 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 SLC4A8Q2Y0W8 1093 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 SPRYD7Q5W111 196 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 GPR153Q6NV75 609 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 IFNL1Q8IU54 200 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 TTC5Q8N0Z6 440 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 SH3TC2Q8TF17 1288 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 TEX13AQ9BXU3 409 aaPredicted RBP6.64□□□□□ -1.35
USP4-209ENST00000475873 DBNDD1Q9H9R9 158 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 FZD1Q9UP38 647 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 ZNF652Q9Y2D9 606 aa6.64□□□□□ -1.35
USP4-209ENST00000475873 SSC5DA1L4H1 1573 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 ZNF646O15015 1829 aaPredicted RBP6.63□□□□□ -1.35
USP4-209ENST00000475873 RGL2O15211 777 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms