RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 TIMELESSQ9UNS1 1208 aa11.03□□□□□ -0.64
CCDC39-202ENST00000471307 KCNMB2Q9Y691 235 aa11.03□□□□□ -0.64
CCDC39-202ENST00000471307 TBC1D8BQ0IIM8 1120 aa11.02□□□□□ -0.65
CCDC39-202ENST00000471307 DHX32Q7L7V1 743 aaKnown RBP11.02□□□□□ -0.65
CCDC39-202ENST00000471307 TRPM4Q8TD43 1214 aa11.02□□□□□ -0.65
CCDC39-202ENST00000471307 HELQQ8TDG4 1101 aa11.02□□□□□ -0.65
CCDC39-202ENST00000471307 TRIM11Q96F44 468 aa11.02□□□□□ -0.65
CCDC39-202ENST00000471307 IGFLR1Q9H665 355 aa11.02□□□□□ -0.65
CCDC39-202ENST00000471307 LILRB5O75023 590 aa11.01□□□□□ -0.65
CCDC39-202ENST00000471307 SASH3O75995 380 aa11.01□□□□□ -0.65
CCDC39-202ENST00000471307 TARSP26639 723 aaKnown RBP11.01□□□□□ -0.65
CCDC39-202ENST00000471307 ZAP70P43403 619 aa11.01□□□□□ -0.65
CCDC39-202ENST00000471307 GPLD1P80108 840 aa11.01□□□□□ -0.65
CCDC39-202ENST00000471307 PLA2G4EQ3MJ16 856 aa11.01□□□□□ -0.65
CCDC39-202ENST00000471307 KRT25Q7Z3Z0 450 aa11.01□□□□□ -0.65
CCDC39-202ENST00000471307 PLVAPQ9BX97 442 aa11.01□□□□□ -0.65
CCDC39-202ENST00000471307 SEPT3Q9UH03 358 aa11.01□□□□□ -0.65
CCDC39-202ENST00000471307 FAM26DQ5JW98 314 aa11□□□□□ -0.65
CCDC39-202ENST00000471307 FRRS1LQ9P0K9 344 aa11□□□□□ -0.65
CCDC39-202ENST00000471307 MTMR7Q9Y216 660 aa11□□□□□ -0.65
CCDC39-202ENST00000471307 USP20Q9Y2K6 914 aa11□□□□□ -0.65
CCDC39-202ENST00000471307 NRLP54845 237 aa10.99□□□□□ -0.65
CCDC39-202ENST00000471307 COL9A3Q14050 684 aaPredicted RBP10.99□□□□□ -0.65
CCDC39-202ENST00000471307 B4GALNT3Q6L9W6 998 aa10.99□□□□□ -0.65
CCDC39-202ENST00000471307 TLR7Q9NYK1 1049 aaKnown RBP10.99□□□□□ -0.65
CCDC39-202ENST00000471307 FNDC3AQ9Y2H6 1198 aaKnown RBP10.99□□□□□ -0.65
CCDC39-202ENST00000471307 KRBA1A5PL33 1030 aa10.98□□□□□ -0.65
CCDC39-202ENST00000471307 SUPT5HO00267 1087 aaKnown RBP10.98□□□□□ -0.65
CCDC39-202ENST00000471307 SPATA31C1P0DKV0 1188 aa10.98□□□□□ -0.65
CCDC39-202ENST00000471307 NID1P14543 1247 aa10.98□□□□□ -0.65
CCDC39-202ENST00000471307 SOX18P35713 384 aa10.98□□□□□ -0.65
CCDC39-202ENST00000471307 GPAT2Q6NUI2 795 aa10.98□□□□□ -0.65
CCDC39-202ENST00000471307 NLRP13Q86W25 1043 aa10.98□□□□□ -0.65
CCDC39-202ENST00000471307 HOXD8P13378 290 aaPredicted RBP10.97□□□□□ -0.65
CCDC39-202ENST00000471307 PSAPL1Q6NUJ1 521 aa10.97□□□□□ -0.65
CCDC39-202ENST00000471307 FAM35AQ86V20 835 aa10.97□□□□□ -0.65
CCDC39-202ENST00000471307 JPH1Q9HDC5 661 aaPredicted RBP10.97□□□□□ -0.65
CCDC39-202ENST00000471307 NAGPAQ9UK23 515 aa10.97□□□□□ -0.65
CCDC39-202ENST00000471307 RPLP1P05386 114 aaKnown RBP10.96□□□□□ -0.65
CCDC39-202ENST00000471307 PSAPP07602 524 aa10.96□□□□□ -0.65
CCDC39-202ENST00000471307 PLAURQ03405 335 aa10.96□□□□□ -0.65
CCDC39-202ENST00000471307 TRIP4Q15650 581 aaPredicted RBP10.96□□□□□ -0.65
CCDC39-202ENST00000471307 PRRT3Q5FWE3 981 aa10.96□□□□□ -0.65
CCDC39-202ENST00000471307 ZBTB42B2RXF5 422 aa10.95□□□□□ -0.66
CCDC39-202ENST00000471307 UBAP1LF5GYI3 381 aa10.95□□□□□ -0.66
CCDC39-202ENST00000471307 MSTNO14793 375 aa10.95□□□□□ -0.66
CCDC39-202ENST00000471307 RGS9O75916 674 aaPredicted RBP10.95□□□□□ -0.66
CCDC39-202ENST00000471307 PDE4CQ08493 712 aa10.95□□□□□ -0.66
CCDC39-202ENST00000471307 C8orf86Q6ZUL3 223 aa10.95□□□□□ -0.66
CCDC39-202ENST00000471307 TTC9Q92623 222 aa10.95□□□□□ -0.66
CCDC39-202ENST00000471307 ZBTB39O15060 712 aa10.94□□□□□ -0.66
CCDC39-202ENST00000471307 MMP20O60882 483 aa10.94□□□□□ -0.66
CCDC39-202ENST00000471307 ITGB2P05107 769 aa10.94□□□□□ -0.66
CCDC39-202ENST00000471307 PHLDB3Q6NSJ2 640 aa10.94□□□□□ -0.66
CCDC39-202ENST00000471307 GPR152Q8TDT2 470 aa10.94□□□□□ -0.66
CCDC39-202ENST00000471307 GTF3C2Q8WUA4 911 aaPredicted RBP10.94□□□□□ -0.66
CCDC39-202ENST00000471307 NUDT8Q8WV74 236 aa10.94□□□□□ -0.66
CCDC39-202ENST00000471307 ARID3AQ99856 593 aa10.94□□□□□ -0.66
CCDC39-202ENST00000471307 CPB1P15086 417 aa10.93□□□□□ -0.66
CCDC39-202ENST00000471307 ALKBH2Q6NS38 261 aa10.93□□□□□ -0.66
CCDC39-202ENST00000471307 LPIN3Q9BQK8 851 aa10.93□□□□□ -0.66
CCDC39-202ENST00000471307 NPR3P17342 541 aa10.92□□□□□ -0.66
CCDC39-202ENST00000471307 AFF1P51825 1210 aaKnown RBP10.92□□□□□ -0.66
CCDC39-202ENST00000471307 NOM1Q5C9Z4 860 aaKnown RBP10.92□□□□□ -0.66
CCDC39-202ENST00000471307 PDE12Q6L8Q7 609 aaKnown RBP10.92□□□□□ -0.66
CCDC39-202ENST00000471307 ELMSAN1Q6PJG2 1045 aa10.92□□□□□ -0.66
CCDC39-202ENST00000471307 SPOCK3Q9BQ16 436 aa10.92□□□□□ -0.66
CCDC39-202ENST00000471307 PCSK2P16519 638 aa10.91□□□□□ -0.66
CCDC39-202ENST00000471307 SCNN1AP37088 669 aa10.91□□□□□ -0.66
CCDC39-202ENST00000471307 TRIM28Q13263 835 aaKnown RBP10.91□□□□□ -0.66
CCDC39-202ENST00000471307 SF3B2Q13435 895 aaKnown RBP10.91□□□□□ -0.66
CCDC39-202ENST00000471307 PERM1Q5SV97 790 aa10.91□□□□□ -0.66
CCDC39-202ENST00000471307 LOC102724428A0A0B4J2F2 783 aa10.9□□□□□ -0.66
CCDC39-202ENST00000471307 PROCP04070 461 aa10.9□□□□□ -0.66
CCDC39-202ENST00000471307 SIK1P57059 783 aa10.9□□□□□ -0.66
CCDC39-202ENST00000471307 TRAPPC3LQ5T215 181 aa10.9□□□□□ -0.66
CCDC39-202ENST00000471307 OR13H1Q8NG92 308 aa10.9□□□□□ -0.66
CCDC39-202ENST00000471307 RBSNQ9H1K0 784 aa10.9□□□□□ -0.66
CCDC39-202ENST00000471307 CARNS1A5YM72 827 aa10.89□□□□□ -0.67
CCDC39-202ENST00000471307 FAM13AO94988 1023 aa10.89□□□□□ -0.67
CCDC39-202ENST00000471307 EIF2AK2P19525 551 aaKnown RBP10.89□□□□□ -0.67
CCDC39-202ENST00000471307 ILDR2Q71H61 639 aa10.89□□□□□ -0.67
CCDC39-202ENST00000471307 NUDT16Q96DE0 195 aaKnown RBP10.89□□□□□ -0.67
CCDC39-202ENST00000471307 NACC1Q96RE7 527 aa10.89□□□□□ -0.67
CCDC39-202ENST00000471307 ABI2Q9NYB9 513 aaPredicted RBP10.89□□□□□ -0.67
CCDC39-202ENST00000471307 GHRHP01286 108 aa10.88□□□□□ -0.67
CCDC39-202ENST00000471307 MPSTP25325 297 aa10.88□□□□□ -0.67
CCDC39-202ENST00000471307 MZF1P28698 734 aaPredicted RBP10.88□□□□□ -0.67
CCDC39-202ENST00000471307 EIF1AXP47813 144 aaKnown RBP10.88□□□□□ -0.67
CCDC39-202ENST00000471307 MLLT1Q03111 559 aaPredicted RBP10.88□□□□□ -0.67
CCDC39-202ENST00000471307 CD163Q86VB7 1156 aa10.88□□□□□ -0.67
CCDC39-202ENST00000471307 C1QTNF9BB2RNN3 333 aa10.87□□□□□ -0.67
CCDC39-202ENST00000471307 RAC1P63000 192 aa10.87□□□□□ -0.67
CCDC39-202ENST00000471307 FKBP4Q02790 459 aaKnown RBP eCLIP10.87□□□□□ -0.67
CCDC39-202ENST00000471307 GRIK5Q16478 980 aa10.87□□□□□ -0.67
CCDC39-202ENST00000471307 TTC39BQ5VTQ0 682 aaPredicted RBP10.87□□□□□ -0.67
CCDC39-202ENST00000471307 MSL1Q68DK7 614 aa10.87□□□□□ -0.67
CCDC39-202ENST00000471307 XKR5Q6UX68 686 aa10.87□□□□□ -0.67
CCDC39-202ENST00000471307 ATCAYQ86WG3 371 aa10.87□□□□□ -0.67
CCDC39-202ENST00000471307 DTWD1Q8N5C7 304 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms