RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 FLT4P35916 1363 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 JCADQ9P266 1359 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 ZBTB7CA1YPR0 619 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 FAM83GA6ND36 823 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 LCE2CQ5TA81 110 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 EHBP1Q8NDI1 1231 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 IRF7Q92985 503 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 SERPINA10Q9UK55 444 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 CDK12Q9NYV4 1490 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-208ENST00000470268 IL13P35225 146 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 AMPHP49418 695 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 EIF4A2Q14240 407 aaKnown RBP6.32□□□□□ -1.4
SF3B1-208ENST00000470268 NR6A1Q15406 480 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 PTPRNQ16849 979 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 EPS8L1Q8TE68 723 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 IP6K1Q92551 441 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 ABCA3Q99758 1704 aa6.32□□□□□ -1.4
SF3B1-208ENST00000470268 CAPN5O15484 640 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-208ENST00000470268 ADAMTS2O95450 1211 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 FAM9BQ8IZU0 186 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 PNMA1Q8ND90 353 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 FBXO41Q8TF61 875 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 ARID3AQ99856 593 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 PRDM11Q9NQV5 511 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 LRP6O75581 1613 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 RTL1A6NKG5 1358 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 KIF24Q5T7B8 1368 aa6.31□□□□□ -1.4
SF3B1-208ENST00000470268 MAP2P11137 1827 aaKnown RBP6.3□□□□□ -1.4
SF3B1-208ENST00000470268 DIAPH1O60610 1272 aaKnown RBP6.3□□□□□ -1.4
SF3B1-208ENST00000470268 F12P00748 615 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-208ENST00000470268 LTV1Q96GA3 475 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-208ENST00000470268 ADAMTS8Q9UP79 889 aa6.3□□□□□ -1.4
SF3B1-208ENST00000470268 SHPRHQ149N8 1683 aa6.3□□□□□ -1.4
SF3B1-208ENST00000470268 CAMTA1Q9Y6Y1 1673 aa6.3□□□□□ -1.4
SF3B1-208ENST00000470268 MPNDQ8N594 471 aa6.3□□□□□ -1.4
SF3B1-208ENST00000470268 CCDC97Q96F63 343 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-208ENST00000470268 CFAP53Q96M91 514 aa6.3□□□□□ -1.4
SF3B1-208ENST00000470268 COL18A1P39060 1754 aa6.3□□□□□ -1.4
SF3B1-208ENST00000470268 LTN1O94822 1766 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 SENP3-EIF4A1A0A087X0R7 540 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 NBPF6Q5VWK0 638 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 TRIM46Q7Z4K8 759 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 AEBP1Q8IUX7 1158 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 ZSCAN1Q8NBB4 408 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 ANKRD24Q8TF21 1146 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 NBPF4Q96M43 638 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 SPATA31A6Q5VVP1 1343 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 LMO7Q8WWI1 1683 aa6.29□□□□□ -1.4
SF3B1-208ENST00000470268 BLMP54132 1417 aaPredicted RBP6.29□□□□□ -1.4
SF3B1-208ENST00000470268 COL5A2P05997 1499 aaPredicted RBP6.29□□□□□ -1.4
SF3B1-208ENST00000470268 POM121CA8CG34 1229 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 U2SURPO15042 1029 aaKnown RBP6.28□□□□□ -1.4
SF3B1-208ENST00000470268 HMOX1P09601 288 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 CCNYL3P0C7X3 344 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 U2AF1L5P0DN76 240 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-208ENST00000470268 U2AF1Q01081 240 aaKnown RBP eCLIP6.28□□□□□ -1.41e-13■■■□□ 18.8
SF3B1-208ENST00000470268 PTCRAQ6ISU1 281 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-208ENST00000470268 BTG4Q9NY30 223 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 H3BM21 787 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 GMPRP36959 345 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 USHBP1Q8N6Y0 703 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 GLMNQ92990 594 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 CALR3Q96L12 384 aaKnown RBP6.28□□□□□ -1.4
SF3B1-208ENST00000470268 C8orf37Q96NL8 207 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 IGSF1Q8N6C5 1336 aa6.28□□□□□ -1.4
SF3B1-208ENST00000470268 ZC3H4Q9UPT8 1303 aaKnown RBP6.28□□□□□ -1.4
SF3B1-208ENST00000470268 SH3BP2P78314 561 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 WDR43Q15061 677 aaKnown RBP eCLIP6.27□□□□□ -1.41
SF3B1-208ENST00000470268 SULT6B1Q6IMI4 303 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 LARP1Q6PKG0 1096 aaKnown RBP6.27□□□□□ -1.41
SF3B1-208ENST00000470268 CCDC146Q8IYE0 955 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 PLEKHF1Q96S99 279 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 STRN4Q9NRL3 753 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 EVA1BQ9NVM1 165 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 FKBPLQ9UIM3 349 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 NUDCQ9Y266 331 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 SLIT2O94813 1529 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 ABCC6O95255 1503 aa6.27□□□□□ -1.41
SF3B1-208ENST00000470268 VARSP26640 1264 aaKnown RBP6.26□□□□□ -1.41
SF3B1-208ENST00000470268 SOX11P35716 441 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 WDR17Q8IZU2 1322 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 KDRP35968 1356 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 NCAPD2Q15021 1401 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 BCL9LQ86UU0 1499 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 RGPD1P0DJD0 1748 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 RGPD5Q99666 1765 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 CENPBP07199 599 aaPredicted RBP6.26□□□□□ -1.41
SF3B1-208ENST00000470268 PRKAR2BP31323 418 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 VAC14Q08AM6 782 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 NGLY1Q96IV0 654 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 PHACTR3Q96KR7 559 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 NLRP2Q9NX02 1062 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 MAP10Q9P2G4 905 aa6.26□□□□□ -1.41
SF3B1-208ENST00000470268 COL14A1Q05707 1796 aaKnown RBP6.25□□□□□ -1.41
SF3B1-208ENST00000470268 CSB-PGBD3P0DP91 1061 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 KCNH2Q12809 1159 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 HDGFL1Q5TGJ6 251 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 ADAMTS19Q8TE59 1207 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 APAF1O14727 1248 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 BMP1P13497 986 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms