RNA–Protein interactions for RNA: ENST00000465229.5

EXOSC3-203, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-203ENST00000465229 BRIP1Q9BX63 1249 aa21.08■□□□□ 0.97
EXOSC3-203ENST00000465229 NRXN2Q9P2S2 1712 aa21.08■□□□□ 0.97
EXOSC3-203ENST00000465229 PNMA6EA0A0J9YXQ4 647 aa21.07■□□□□ 0.96
EXOSC3-203ENST00000465229 SF3B3Q15393 1217 aaKnown RBP21.07■□□□□ 0.96
EXOSC3-203ENST00000465229 SRCAPQ6ZRS2 3230 aa21.07■□□□□ 0.96
EXOSC3-203ENST00000465229 CCDC85AQ96PX6 553 aaPredicted RBP21.07■□□□□ 0.96
EXOSC3-203ENST00000465229 RIC1Q4ADV7 1423 aa21.06■□□□□ 0.96
EXOSC3-203ENST00000465229 KLRG2A4D1S0 409 aaPredicted RBP21.06■□□□□ 0.96
EXOSC3-203ENST00000465229 SRGAP3O43295 1099 aa21.06■□□□□ 0.96
EXOSC3-203ENST00000465229 GREM2Q9H772 168 aa21.06■□□□□ 0.96
EXOSC3-203ENST00000465229 SPON1Q9HCB6 807 aa21.06■□□□□ 0.96
EXOSC3-203ENST00000465229 CCDC152Q4G0S7 254 aa21.05■□□□□ 0.96
EXOSC3-203ENST00000465229 SSH3Q8TE77 659 aa21.05■□□□□ 0.96
EXOSC3-203ENST00000465229 CHMP3Q9Y3E7 222 aa21.05■□□□□ 0.96
EXOSC3-203ENST00000465229 DDX60Q8IY21 1712 aaKnown RBP21.05■□□□□ 0.96
EXOSC3-203ENST00000465229 POLA2Q14181 598 aa21.04■□□□□ 0.96
EXOSC3-203ENST00000465229 FAM161AQ3B820 660 aa21.04■□□□□ 0.96
EXOSC3-203ENST00000465229 CRY2Q49AN0 593 aa21.04■□□□□ 0.96
EXOSC3-203ENST00000465229 PDE6BP35913 854 aa21.03■□□□□ 0.96
EXOSC3-203ENST00000465229 RFX5P48382 616 aaPredicted RBP21.03■□□□□ 0.96
EXOSC3-203ENST00000465229 HMMRO75330 724 aa21.02■□□□□ 0.96
EXOSC3-203ENST00000465229 IGHDP01880 384 aa21.02■□□□□ 0.96
EXOSC3-203ENST00000465229 ITGA6P23229 1130 aa21.02■□□□□ 0.96
EXOSC3-203ENST00000465229 HDAC1Q13547 482 aaPredicted RBP21.02■□□□□ 0.96
EXOSC3-203ENST00000465229 SEC31BQ9NQW1 1179 aa21.02■□□□□ 0.96
EXOSC3-203ENST00000465229 IFIT5Q13325 482 aaKnown RBP21.01■□□□□ 0.95
EXOSC3-203ENST00000465229 CCDC57Q2TAC2 916 aa21.01■□□□□ 0.95
EXOSC3-203ENST00000465229 RTL9Q8NET4 1388 aa21.01■□□□□ 0.95
EXOSC3-203ENST00000465229 C10orf71Q711Q0 1435 aa21.01■□□□□ 0.95
EXOSC3-203ENST00000465229 LAMB2P55268 1798 aa21.01■□□□□ 0.95
EXOSC3-203ENST00000465229 RWDD1Q9H446 243 aaPredicted RBP21■□□□□ 0.95
EXOSC3-203ENST00000465229 TNRC6CQ9HCJ0 1690 aaKnown RBP21■□□□□ 0.95
EXOSC3-203ENST00000465229 ANKRD18BA2A2Z9 1011 aa21■□□□□ 0.95
EXOSC3-203ENST00000465229 SRGNP10124 158 aa21■□□□□ 0.95
EXOSC3-203ENST00000465229 PTPN12Q05209 780 aaKnown RBP21■□□□□ 0.95
EXOSC3-203ENST00000465229 KLHDC4Q8TBB5 520 aa21■□□□□ 0.95
EXOSC3-203ENST00000465229 PA2G4Q9UQ80 394 aaKnown RBP21■□□□□ 0.95
EXOSC3-203ENST00000465229 HOXA10P31260 410 aaPredicted RBP20.99■□□□□ 0.95
EXOSC3-203ENST00000465229 ZNF594Q96JF6 807 aaPredicted RBP20.99■□□□□ 0.95
EXOSC3-203ENST00000465229 BACH2Q9BYV9 841 aa20.99■□□□□ 0.95
EXOSC3-203ENST00000465229 MYH3P11055 1940 aa20.98■□□□□ 0.95
EXOSC3-203ENST00000465229 ANKRD31Q8N7Z5 1873 aa20.98■□□□□ 0.95
EXOSC3-203ENST00000465229 PDE4AP27815 886 aa20.98■□□□□ 0.95
EXOSC3-203ENST00000465229 DDX46Q7L014 1031 aaKnown RBP20.98■□□□□ 0.95
EXOSC3-203ENST00000465229 C2CD5Q86YS7 1000 aa20.98■□□□□ 0.95
EXOSC3-203ENST00000465229 RPGRQ92834 1020 aaKnown RBP20.98■□□□□ 0.95
EXOSC3-203ENST00000465229 COPRSQ9NQ92 184 aa20.98■□□□□ 0.95
EXOSC3-203ENST00000465229 H0YIN7 160 aa20.97■□□□□ 0.95
EXOSC3-203ENST00000465229 CHRNA5P30532 468 aa20.97■□□□□ 0.95
EXOSC3-203ENST00000465229 DCTPP1Q9H773 170 aa20.97■□□□□ 0.95
EXOSC3-203ENST00000465229 NPR1P16066 1061 aa20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 CELF1Q92879 486 aaKnown RBP20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 RBM17Q96I25 401 aaKnown RBP20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 CDC5LQ99459 802 aaKnown RBP20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 PDZRN3Q9UPQ7 1066 aa20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 NOP58Q9Y2X3 529 aaKnown RBP20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 CD2APQ9Y5K6 639 aa20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 SURF6O75683 361 aaKnown RBP20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 TAF7LQ5H9L4 462 aa20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 MASTLQ96GX5 879 aa20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 CRAMP1Q96RY5 1269 aa20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 PPP1R1BQ9UD71 204 aaPredicted RBP20.96■□□□□ 0.95
EXOSC3-203ENST00000465229 RPS8P62241 208 aaKnown RBP20.95■□□□□ 0.94
EXOSC3-203ENST00000465229 PUS3Q9BZE2 481 aaKnown RBP20.95■□□□□ 0.94
EXOSC3-203ENST00000465229 SIL1Q9H173 461 aa20.95■□□□□ 0.94
EXOSC3-203ENST00000465229 EXOC6BQ9Y2D4 811 aa20.95■□□□□ 0.94
EXOSC3-203ENST00000465229 TGFB2P61812 414 aa20.94■□□□□ 0.94
EXOSC3-203ENST00000465229 GRAPQ13588 217 aa20.94■□□□□ 0.94
EXOSC3-203ENST00000465229 ANKRD18AQ8IVF6 992 aa20.94■□□□□ 0.94
EXOSC3-203ENST00000465229 GRAPLQ8TC17 118 aaPredicted RBP20.94■□□□□ 0.94
EXOSC3-203ENST00000465229 A0A0G2JLW4 131 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 DPEP1P16444 411 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 KCNA3P22001 575 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 STYK1Q6J9G0 422 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 LDHAL6AQ6ZMR3 332 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 ZNF622Q969S3 477 aaKnown RBP eCLIP20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 COL4A1P02462 1669 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 EYA2O00167 538 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 IGHMBP2P38935 993 aaKnown RBP20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 LRRC24Q50LG9 513 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 SMC5Q8IY18 1101 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 KLHL34Q8N239 644 aa20.93■□□□□ 0.94
EXOSC3-203ENST00000465229 GOLGB1Q14789 3259 aaKnown RBP20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 ALDH1B1P30837 517 aa20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 G3BP1Q13283 466 aaKnown RBP eCLIP20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 ATG9AQ7Z3C6 839 aa20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 GCC1Q96CN9 775 aa20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 MPHOSPH8Q99549 860 aa20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 BSDC1Q9NW68 430 aaPredicted RBP20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 FBXO3Q9UK99 471 aa20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 RIPOR2Q9Y4F9 1068 aa20.92■□□□□ 0.94
EXOSC3-203ENST00000465229 BBOX1O75936 387 aa20.91■□□□□ 0.94
EXOSC3-203ENST00000465229 CIAO1O76071 339 aa20.91■□□□□ 0.94
EXOSC3-203ENST00000465229 KIF13BQ9NQT8 1826 aa20.91■□□□□ 0.94
EXOSC3-203ENST00000465229 HSP90AB4PQ58FF6 505 aa20.9■□□□□ 0.94
EXOSC3-203ENST00000465229 CNNM1Q9NRU3 951 aa20.9■□□□□ 0.94
EXOSC3-203ENST00000465229 TAF1P21675 1872 aa20.9■□□□□ 0.94
EXOSC3-203ENST00000465229 OS9Q13438 667 aaPredicted RBP20.89■□□□□ 0.94
EXOSC3-203ENST00000465229 SKAP1Q86WV1 359 aa20.89■□□□□ 0.94
EXOSC3-203ENST00000465229 CNKSR1Q969H4 720 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms