RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 SOX12O15370 315 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 KCNJ4P48050 445 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 RESTQ13127 1097 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 NMIQ13287 307 aaPredicted RBP8.6□□□□□ -1.03
USP48-206ENST00000464577 TOB2Q14106 344 aaPredicted RBP8.6□□□□□ -1.03
USP48-206ENST00000464577 IQCB1Q15051 598 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 CCDC144BQ3MJ40 725 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 LARP1Q6PKG0 1096 aaKnown RBP8.6□□□□□ -1.03
USP48-206ENST00000464577 ZNF771Q7L3S4 317 aaPredicted RBP8.6□□□□□ -1.03
USP48-206ENST00000464577 LRRC8AQ8IWT6 810 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 CCDC144CPQ8IYA2 1237 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 KRT222Q8N1A0 295 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 BICD2Q8TD16 824 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 PGBD1Q96JS3 809 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 DNAJC25Q9H1X3 360 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 CHMP3Q9Y3E7 222 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 MRC1P22897 1456 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 NR1I2O75469 434 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 SLFN14P0C7P3 912 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 HOXC9P31274 260 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 EIF4A1P60842 406 aaKnown RBP8.6□□□□□ -1.03
USP48-206ENST00000464577 STX1AQ16623 288 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 FAM173BQ6P4H8 233 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 ERO1AQ96HE7 468 aa8.6□□□□□ -1.03
USP48-206ENST00000464577 ZSCAN16Q9H4T2 348 aaPredicted RBP8.6□□□□□ -1.03
USP48-206ENST00000464577 ZBTB12Q9Y330 459 aaPredicted RBP8.6□□□□□ -1.03
USP48-206ENST00000464577 TNRQ92752 1358 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 PI4KAP2A4QPH2 592 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 GOLGA6L19H0YKK7 550 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 ATXN8OSP0DMR3 200 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 KRT32Q14532 448 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 PI4KAP1Q8N8J0 262 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 CHPF2Q9P2E5 772 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 CFAP45Q9UL16 551 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 RFX7Q2KHR2 1363 aa8.59□□□□□ -1.03
USP48-206ENST00000464577 PTPN14Q15678 1187 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 AACSQ86V21 672 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 GTF3C6Q969F1 213 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 FAM227BQ96M60 508 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 TFIP11Q9UBB9 837 aaKnown RBP8.58□□□□□ -1.04
USP48-206ENST00000464577 MYH15Q9Y2K3 1946 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 LMO7Q8WWI1 1683 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 GSDMDP57764 484 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 CCZ1BP86790 482 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 CCZ1P86791 482 aaPredicted RBP8.58□□□□□ -1.04
USP48-206ENST00000464577 TERF2Q15554 542 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 USPL1Q5W0Q7 1092 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 ATL3Q6DD88 541 aa8.58□□□□□ -1.04
USP48-206ENST00000464577 UTYO14607 1347 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 A0A0D9SFI3 127 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 CCDC66A2RUB6 948 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 CCDC69A6NI79 296 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 DTNBO60941 627 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 SKILP12757 684 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 DHX8Q14562 1220 aaKnown RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 NAA30Q147X3 362 aaPredicted RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 KMT5BQ4FZB7 885 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 C11orf57Q6ZUT1 292 aaPredicted RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 CCAR2Q8N163 923 aaKnown RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 DDX54Q8TDD1 881 aaKnown RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 BRF1Q92994 677 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 LLPHQ9BRT6 129 aaKnown RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 ZNF215Q9UL58 517 aaPredicted RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 NCAPD2Q15021 1401 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 ANKARQ7Z5J8 1434 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 ERBB3P21860 1342 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 OVOS2A0A0G2JMS6 1433 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 SLU7O95391 586 aaKnown RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 TUBB4AP04350 444 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 EIF2S2P20042 333 aaKnown RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 KCNJ6P48051 423 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 NAA16Q6N069 864 aaPredicted RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 SMARCC2Q8TAQ2 1214 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 FSD1Q9BTV5 496 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 OSBPL5Q9H0X9 879 aaPredicted RBP8.57□□□□□ -1.04
USP48-206ENST00000464577 ANO10Q9NW15 660 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 RCOR1Q9UKL0 485 aa8.57□□□□□ -1.04
USP48-206ENST00000464577 NUTM2FA1L443 756 aa8.56□□□□□ -1.04
USP48-206ENST00000464577 USP27XA6NNY8 438 aa8.56□□□□□ -1.04
USP48-206ENST00000464577 DHX40Q8IX18 779 aaKnown RBP8.56□□□□□ -1.04
USP48-206ENST00000464577 NGDNQ8NEJ9 315 aaKnown RBP8.56□□□□□ -1.04
USP48-206ENST00000464577 ZNF592Q92610 1267 aa8.56□□□□□ -1.04
USP48-206ENST00000464577 L2HGDHQ9H9P8 463 aa8.56□□□□□ -1.04
USP48-206ENST00000464577 C9orf78Q9NZ63 289 aaPredicted RBP8.56□□□□□ -1.04
USP48-206ENST00000464577 IMPACTQ9P2X3 320 aa8.56□□□□□ -1.04
USP48-206ENST00000464577 DBF4Q9UBU7 674 aaPredicted RBP8.56□□□□□ -1.04
USP48-206ENST00000464577 ABCC6O95255 1503 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 BECN2A8MW95 431 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 H3BQV1 296 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 JAK2O60674 1132 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 IGSF3O75054 1194 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 TAF5LO75529 589 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 SASH1O94885 1247 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 ADD1P35611 737 aaKnown RBP8.55□□□□□ -1.04
USP48-206ENST00000464577 G3BP1Q13283 466 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP48-206ENST00000464577 COL9A3Q14050 684 aaPredicted RBP8.55□□□□□ -1.04
USP48-206ENST00000464577 IFFO2Q5TF58 517 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 FBXO38Q6PIJ6 1188 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 KSR2Q6VAB6 950 aa8.55□□□□□ -1.04
USP48-206ENST00000464577 CCDC73Q6ZRK6 1079 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms