RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 CREB3L3Q68CJ9 461 aa16.75■□□□□ 0.27
PTPRN-210ENST00000460801 FAM89AQ96GI7 184 aa16.75■□□□□ 0.27
PTPRN-210ENST00000460801 ZBTB1Q9Y2K1 713 aa16.75■□□□□ 0.27
PTPRN-210ENST00000460801 ZNF609O15014 1411 aa16.75■□□□□ 0.27
PTPRN-210ENST00000460801 FSD2A1L4K1 749 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 ZKSCAN1P17029 563 aaPredicted RBP16.74■□□□□ 0.27
PTPRN-210ENST00000460801 TIMM10P62072 90 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 CCDC57Q2TAC2 916 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 HSP90AB3PQ58FF7 597 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 RUFY3Q7L099 469 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 JAKMIP1Q96N16 626 aaKnown RBP16.74■□□□□ 0.27
PTPRN-210ENST00000460801 PUS3Q9BZE2 481 aaKnown RBP16.74■□□□□ 0.27
PTPRN-210ENST00000460801 LIMCH1Q9UPQ0 1083 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 CDHR2Q9BYE9 1310 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 BRD1O95696 1058 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 DDB1Q16531 1140 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 VPS53Q5VIR6 699 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 ZNF589Q86UQ0 364 aaPredicted RBP16.74■□□□□ 0.27
PTPRN-210ENST00000460801 NLRP10Q86W26 655 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 NEUROD6Q96NK8 337 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 NDUFB9Q9Y6M9 179 aa16.74■□□□□ 0.27
PTPRN-210ENST00000460801 IL6STP40189 918 aaPredicted RBP16.73■□□□□ 0.27
PTPRN-210ENST00000460801 TICAM2Q86XR7 235 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 DNAJC2Q99543 621 aaKnown RBP16.73■□□□□ 0.27
PTPRN-210ENST00000460801 ANKRD36CQ5JPF3 1778 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 SLC27A2O14975 620 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 TAF5LO75529 589 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 CPA1P15085 419 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 KCNJ4P48050 445 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 L1TD1Q5T7N2 865 aaKnown RBP16.73■□□□□ 0.27
PTPRN-210ENST00000460801 MCTP1Q6DN14 999 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 ARXQ96QS3 562 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 CYP46A1Q9Y6A2 500 aa16.73■□□□□ 0.27
PTPRN-210ENST00000460801 SPATA31A5Q5VU36 1347 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 SPATA31A7Q8IWB4 1347 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 RPAP1Q9BWH6 1393 aaPredicted RBP16.72■□□□□ 0.27
PTPRN-210ENST00000460801 ERVV-1B6SEH8 477 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 USPL1Q5W0Q7 1092 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 KBTBD3Q8NAB2 608 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 PDRG1Q9NUG6 133 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 CEP126Q9P2H0 1117 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 NUP98P52948 1817 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 PALLDQ8WX93 1383 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 A0A1B0GUL7 405 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 TSGA10IPQ3SY00 556 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 RNF20Q5VTR2 975 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 LMBRD1Q9NUN5 540 aa16.72■□□□□ 0.27
PTPRN-210ENST00000460801 GOLGA6L3A6NEY3 463 aa16.71■□□□□ 0.27
PTPRN-210ENST00000460801 KLHL40Q2TBA0 621 aa16.71■□□□□ 0.27
PTPRN-210ENST00000460801 DDX46Q7L014 1031 aaKnown RBP16.71■□□□□ 0.27
PTPRN-210ENST00000460801 MARCH10Q8NA82 808 aaPredicted RBP16.71■□□□□ 0.27
PTPRN-210ENST00000460801 NWD2Q9ULI1 1742 aa16.71■□□□□ 0.27
PTPRN-210ENST00000460801 GPTP24298 496 aa16.7■□□□□ 0.26
PTPRN-210ENST00000460801 SYNE4Q8N205 404 aa16.7■□□□□ 0.26
PTPRN-210ENST00000460801 PAG1Q9NWQ8 432 aa16.7■□□□□ 0.26
PTPRN-210ENST00000460801 HMG20BQ9P0W2 317 aa16.7■□□□□ 0.26
PTPRN-210ENST00000460801 SLIT2O94813 1529 aa16.7■□□□□ 0.26
PTPRN-210ENST00000460801 PSMA5P28066 241 aa16.7■□□□□ 0.26
PTPRN-210ENST00000460801 IFIT5Q13325 482 aaKnown RBP16.7■□□□□ 0.26
PTPRN-210ENST00000460801 MCMDC2Q4G0Z9 681 aa16.7■□□□□ 0.26
PTPRN-210ENST00000460801 BARGINQ6ZT62 677 aa16.7■□□□□ 0.26
PTPRN-210ENST00000460801 DZIP3Q86Y13 1208 aaKnown RBP16.7■□□□□ 0.26
PTPRN-210ENST00000460801 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.7■□□□□ 0.26
PTPRN-210ENST00000460801 TTLL11Q8NHH1 800 aa16.69■□□□□ 0.26
PTPRN-210ENST00000460801 ZSCAN31Q96LW9 406 aaPredicted RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 AKAP2Q9Y2D5 859 aa16.69■□□□□ 0.26
PTPRN-210ENST00000460801 CCDC9Q9Y3X0 531 aaKnown RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 SPEF2Q9C093 1822 aa16.69■□□□□ 0.26
PTPRN-210ENST00000460801 NUTM2BA6NNL0 878 aaPredicted RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 NUTM2EB1AL46 878 aaPredicted RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 EIF5P55010 431 aaKnown RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 NUTM2AQ8IVF1 878 aaPredicted RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 LARP6Q9BRS8 491 aaKnown RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 ISY1Q9ULR0 285 aaKnown RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 DDX49Q9Y6V7 483 aaKnown RBP16.69■□□□□ 0.26
PTPRN-210ENST00000460801 SH3TC1Q8TE82 1336 aa16.69■□□□□ 0.26
PTPRN-210ENST00000460801 MYH3P11055 1940 aa16.68■□□□□ 0.26
PTPRN-210ENST00000460801 GOLIM4O00461 696 aa16.68■□□□□ 0.26
PTPRN-210ENST00000460801 TOM1O60784 492 aa16.68■□□□□ 0.26
PTPRN-210ENST00000460801 CHGBP05060 677 aa16.68■□□□□ 0.26
PTPRN-210ENST00000460801 ZNF34Q8IZ26 560 aa16.68■□□□□ 0.26
PTPRN-210ENST00000460801 ALDH8A1Q9H2A2 487 aaPredicted RBP16.68■□□□□ 0.26
PTPRN-210ENST00000460801 SH2B1Q9NRF2 756 aaPredicted RBP16.68■□□□□ 0.26
PTPRN-210ENST00000460801 TBC1D2BQ9UPU7 963 aa16.68■□□□□ 0.26
PTPRN-210ENST00000460801 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.68■□□□□ 0.26
PTPRN-210ENST00000460801 LARGE1O95461 756 aa16.68■□□□□ 0.26
PTPRN-210ENST00000460801 IFIT1P09914 478 aaKnown RBP16.68■□□□□ 0.26
PTPRN-210ENST00000460801 CTSWP56202 376 aa16.68■□□□□ 0.26
PTPRN-210ENST00000460801 INTS5Q6P9B9 1019 aaKnown RBP16.68■□□□□ 0.26
PTPRN-210ENST00000460801 CCDC85AQ96PX6 553 aaPredicted RBP16.68■□□□□ 0.26
PTPRN-210ENST00000460801 SEC62Q99442 399 aaKnown RBP16.68■□□□□ 0.26
PTPRN-210ENST00000460801 IRS4O14654 1257 aaPredicted RBP16.67■□□□□ 0.26
PTPRN-210ENST00000460801 TAF7LQ5H9L4 462 aa16.67■□□□□ 0.26
PTPRN-210ENST00000460801 ACSBG1Q96GR2 724 aa16.67■□□□□ 0.26
PTPRN-210ENST00000460801 HELLSQ9NRZ9 838 aa16.67■□□□□ 0.26
PTPRN-210ENST00000460801 TRMT112Q9UI30 125 aaKnown RBP16.67■□□□□ 0.26
PTPRN-210ENST00000460801 BRPF3Q9ULD4 1205 aa16.67■□□□□ 0.26
PTPRN-210ENST00000460801 TAF6LQ9Y6J9 622 aa16.67■□□□□ 0.26
PTPRN-210ENST00000460801 FOXD4L5Q5VV16 416 aaPredicted RBP16.66■□□□□ 0.26
PTPRN-210ENST00000460801 CCDC129Q6ZRS4 1044 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms