RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 HEG1Q9ULI3 1381 aa8.59□□□□□ -1.03
COL28A1-202ENST00000430711 GLRX3O76003 335 aaKnown RBP8.59□□□□□ -1.03
COL28A1-202ENST00000430711 MTX1Q13505 466 aa8.59□□□□□ -1.03
COL28A1-202ENST00000430711 LUZP1Q86V48 1076 aa8.59□□□□□ -1.03
COL28A1-202ENST00000430711 NRBP1Q9UHY1 535 aa8.59□□□□□ -1.03
COL28A1-202ENST00000430711 UBE2HP62256 183 aa8.59□□□□□ -1.03
COL28A1-202ENST00000430711 LRMPQ12912 555 aa8.59□□□□□ -1.03
COL28A1-202ENST00000430711 CLASRPQ8N2M8 674 aaKnown RBP8.59□□□□□ -1.03
COL28A1-202ENST00000430711 KDM6AO15550 1401 aaPredicted RBP8.59□□□□□ -1.03
COL28A1-202ENST00000430711 CHD2O14647 1828 aaKnown RBP8.59□□□□□ -1.04
COL28A1-202ENST00000430711 GCP02774 474 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 IFIT2P09913 472 aaKnown RBP8.58□□□□□ -1.04
COL28A1-202ENST00000430711 AKAP4Q5JQC9 854 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 MEX3CQ5U5Q3 659 aaKnown RBP8.58□□□□□ -1.04
COL28A1-202ENST00000430711 KSR2Q6VAB6 950 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 ANKRD24Q8TF21 1146 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 ERCC4Q92889 916 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-202ENST00000430711 MAP4K1Q92918 833 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 KCNB2Q92953 911 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 DBNLQ9UJU6 430 aaKnown RBP8.58□□□□□ -1.04
COL28A1-202ENST00000430711 MED23Q9ULK4 1368 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 LAMA4Q16363 1823 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 GRM8O00222 908 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 ZNF609O15014 1411 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 KDM4AO75164 1064 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 ZC3H6P61129 1189 aaKnown RBP8.58□□□□□ -1.04
COL28A1-202ENST00000430711 VPS53Q5VIR6 699 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 STOX1Q6ZVD7 989 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 PGBD1Q96JS3 809 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 DBF4Q9UBU7 674 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-202ENST00000430711 MRVI1Q9Y6F6 885 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 TTC41PQ6P2S7 1318 aa8.58□□□□□ -1.04
COL28A1-202ENST00000430711 ATP5J2-PTCD1G3V325 749 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 PTCD1O75127 700 aaKnown RBP8.57□□□□□ -1.04
COL28A1-202ENST00000430711 PSME1Q06323 249 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 KIAA2012Q0VF49 1180 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 ARID5BQ14865 1188 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 NOLC1Q14978 699 aaKnown RBP eCLIP8.57□□□□□ -1.04
COL28A1-202ENST00000430711 LRP10Q7Z4F1 713 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 ARHGEF25Q86VW2 580 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 CCDC125Q86Z20 511 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 PDCL3Q9H2J4 239 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 CYP46A1Q9Y6A2 500 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 AHDC1Q5TGY3 1603 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-202ENST00000430711 PTGS1P23219 599 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 CEBPZQ03701 1054 aaKnown RBP8.57□□□□□ -1.04
COL28A1-202ENST00000430711 NAA30Q147X3 362 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-202ENST00000430711 CABLES1Q8TDN4 633 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 XAGE3Q8WTP9 111 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 PIBF1Q8WXW3 757 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 MYD88Q99836 296 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 FSD1Q9BTV5 496 aa8.57□□□□□ -1.04
COL28A1-202ENST00000430711 NR1I2O75469 434 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 TFCP2Q12800 502 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 LARP1BQ659C4 914 aaKnown RBP8.56□□□□□ -1.04
COL28A1-202ENST00000430711 SASS6Q6UVJ0 657 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 DDX46Q7L014 1031 aaKnown RBP8.56□□□□□ -1.04
COL28A1-202ENST00000430711 COPS6Q7L5N1 327 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 NFATC2IPQ8NCF5 419 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 NKX2-3Q8TAU0 364 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 ZNF496Q96IT1 587 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-202ENST00000430711 DBNDD2Q9BQY9 259 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 GPHNQ9NQX3 736 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-202ENST00000430711 BABAM1Q9NWV8 329 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 DACT1Q9NYF0 836 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 MEGF6O75095 1541 aa8.56□□□□□ -1.04
COL28A1-202ENST00000430711 AFDNP55196 1824 aaKnown RBP8.56□□□□□ -1.04
COL28A1-202ENST00000430711 NEURL1BA8MQ27 555 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 KCNJ4P48050 445 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 RFX5P48382 616 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-202ENST00000430711 CHST3Q7LGC8 479 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 EVI5LQ96CN4 794 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-202ENST00000430711 GLI3P10071 1580 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 NCAPD2Q15021 1401 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 TAF5LO75529 589 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 RPS6KB1P23443 525 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 RBM6P78332 1123 aaKnown RBP8.55□□□□□ -1.04
COL28A1-202ENST00000430711 CCDC144BQ3MJ40 725 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 CCDC144CPQ8IYA2 1237 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 SYAP1Q96A49 352 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-202ENST00000430711 DNAJC2Q99543 621 aaKnown RBP8.55□□□□□ -1.04
COL28A1-202ENST00000430711 SSUH2Q9Y2M2 353 aa8.55□□□□□ -1.04
COL28A1-202ENST00000430711 PHRF1Q9P1Y6 1649 aaKnown RBP8.55□□□□□ -1.04
COL28A1-202ENST00000430711 ADAMTS7Q9UKP4 1686 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 CYP21A2P08686 494 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 PTPN12Q05209 780 aaKnown RBP8.54□□□□□ -1.04
COL28A1-202ENST00000430711 ATP2B3Q16720 1220 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 ANO6Q4KMQ2 910 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 PLEKHO1Q53GL0 409 aaPredicted RBP8.54□□□□□ -1.04
COL28A1-202ENST00000430711 DNTTIP2Q5QJE6 756 aaKnown RBP8.54□□□□□ -1.04
COL28A1-202ENST00000430711 UBE3BQ7Z3V4 1068 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 LINS1Q8NG48 757 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 PKNOX2Q96KN3 472 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 NCOA5Q9HCD5 579 aaKnown RBP8.54□□□□□ -1.04
COL28A1-202ENST00000430711 GJB4Q9NTQ9 266 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 CAMTA1Q9Y6Y1 1673 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 TRPM3Q9HCF6 1732 aaPredicted RBP8.54□□□□□ -1.04
COL28A1-202ENST00000430711 SPDYE2BA6NHP3 402 aa8.54□□□□□ -1.04
COL28A1-202ENST00000430711 ALDH1L1O75891 902 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms