RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 DDX21Q9NR30 783 aaKnown RBP eCLIP13.01□□□□□ -0.33
LIMS1-207ENST00000422797 PHF8Q9UPP1 1060 aa13.01□□□□□ -0.33
LIMS1-207ENST00000422797 CPA1P15085 419 aa13□□□□□ -0.33
LIMS1-207ENST00000422797 NEXNQ0ZGT2 675 aa13□□□□□ -0.33
LIMS1-207ENST00000422797 NAA16Q6N069 864 aaPredicted RBP13□□□□□ -0.33
LIMS1-207ENST00000422797 LARP1Q6PKG0 1096 aaKnown RBP13□□□□□ -0.33
LIMS1-207ENST00000422797 CDC37L1Q7L3B6 337 aa13□□□□□ -0.33
LIMS1-207ENST00000422797 LTV1Q96GA3 475 aaPredicted RBP13□□□□□ -0.33
LIMS1-207ENST00000422797 CBX8Q9HC52 389 aa13□□□□□ -0.33
LIMS1-207ENST00000422797 DACT1Q9NYF0 836 aa13□□□□□ -0.33
LIMS1-207ENST00000422797 PRDM4Q9UKN5 801 aa13□□□□□ -0.33
LIMS1-207ENST00000422797 PYCARDQ9ULZ3 195 aa13□□□□□ -0.33
LIMS1-207ENST00000422797 KIF2AO00139 706 aaPredicted RBP12.99□□□□□ -0.33
LIMS1-207ENST00000422797 RIOK3O14730 519 aaKnown RBP12.99□□□□□ -0.33
LIMS1-207ENST00000422797 ANO6Q4KMQ2 910 aa12.99□□□□□ -0.33
LIMS1-207ENST00000422797 GTF3C6Q969F1 213 aa12.99□□□□□ -0.33
LIMS1-207ENST00000422797 MRFAP1L1Q96HT8 127 aa12.99□□□□□ -0.33
LIMS1-207ENST00000422797 SLIT3O75094 1523 aa12.99□□□□□ -0.33
LIMS1-207ENST00000422797 ABCC6O95255 1503 aa12.99□□□□□ -0.33
LIMS1-207ENST00000422797 LIG1P18858 919 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 ATP5JP18859 108 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 STX1AQ16623 288 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 DRC7Q8IY82 874 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 NECAB1Q8N987 351 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 BICD2Q8TD16 824 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 TRIM5Q9C035 493 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 LGR6Q9HBX8 967 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 PLSCR2Q9NRY7 297 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 CGNQ9P2M7 1197 aaKnown RBP12.98□□□□□ -0.33
LIMS1-207ENST00000422797 SIPA1L3O60292 1781 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-207ENST00000422797 GOLGA6L19H0YKK7 550 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 AP5Z1O43299 807 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 SASH1O94885 1247 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 KIF20AO95235 890 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 PTGS1P23219 599 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 ZNF165P49910 485 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 RESTQ13127 1097 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 TOB2Q14106 344 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-207ENST00000422797 PPP4R3BQ5MIZ7 849 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 NBPF6Q5VWK0 638 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 SPC24Q8NBT2 197 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 EAF2Q96CJ1 260 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-207ENST00000422797 SUCLG2Q96I99 432 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 NBPF4Q96M43 638 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 FAM227BQ96M60 508 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 ZNF396Q96N95 335 aaPredicted RBP12.98□□□□□ -0.33
LIMS1-207ENST00000422797 KCND1Q9NSA2 647 aa12.98□□□□□ -0.33
LIMS1-207ENST00000422797 A0A0D9SFI3 127 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 H3BQV1 296 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 TAF5LO75529 589 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 TUBB4AP04350 444 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 IFFO2Q5TF58 517 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 ZSCAN25Q6NSZ9 544 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 CCDC186Q7Z3E2 898 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 RGS22Q8NE09 1264 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 NEK1Q96PY6 1258 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 LARP6Q9BRS8 491 aaKnown RBP12.97□□□□□ -0.33
LIMS1-207ENST00000422797 COPRSQ9NQ92 184 aa12.97□□□□□ -0.33
LIMS1-207ENST00000422797 NUTM2GQ5VZR2 741 aa12.96□□□□□ -0.33
LIMS1-207ENST00000422797 LUZP1Q86V48 1076 aa12.96□□□□□ -0.33
LIMS1-207ENST00000422797 C17orf53Q8N3J3 647 aaPredicted RBP12.96□□□□□ -0.33
LIMS1-207ENST00000422797 USHBP1Q8N6Y0 703 aa12.96□□□□□ -0.33
LIMS1-207ENST00000422797 CCDC112Q8NEF3 446 aa12.96□□□□□ -0.33
LIMS1-207ENST00000422797 NAT10Q9H0A0 1025 aaKnown RBP12.96□□□□□ -0.33
LIMS1-207ENST00000422797 BICC1Q9H694 974 aaKnown RBP12.96□□□□□ -0.33
LIMS1-207ENST00000422797 CLIP2Q9UDT6 1046 aa12.96□□□□□ -0.33
LIMS1-207ENST00000422797 PA2G4Q9UQ80 394 aaKnown RBP12.96□□□□□ -0.33
LIMS1-207ENST00000422797 SH3TC1Q8TE82 1336 aa12.95□□□□□ -0.34
LIMS1-207ENST00000422797 GSDMDP57764 484 aa12.95□□□□□ -0.34
LIMS1-207ENST00000422797 RBM6P78332 1123 aaKnown RBP12.95□□□□□ -0.34
LIMS1-207ENST00000422797 CCDC73Q6ZRK6 1079 aa12.95□□□□□ -0.34
LIMS1-207ENST00000422797 FERMT3Q86UX7 667 aa12.95□□□□□ -0.34
LIMS1-207ENST00000422797 SMARCC2Q8TAQ2 1214 aa12.95□□□□□ -0.34
LIMS1-207ENST00000422797 ANO10Q9NW15 660 aa12.95□□□□□ -0.34
LIMS1-207ENST00000422797 OGFRQ9NZT2 677 aa12.95□□□□□ -0.34
LIMS1-207ENST00000422797 PFKFB2O60825 505 aa12.94□□□□□ -0.34
LIMS1-207ENST00000422797 KCNA6P17658 529 aa12.94□□□□□ -0.34
LIMS1-207ENST00000422797 FAM193AP78312 1265 aa12.94□□□□□ -0.34
LIMS1-207ENST00000422797 ILDR2Q71H61 639 aa12.94□□□□□ -0.34
LIMS1-207ENST00000422797 C14orf37Q86TY3 774 aa12.94□□□□□ -0.34
LIMS1-207ENST00000422797 RCOR1Q9UKL0 485 aa12.94□□□□□ -0.34
LIMS1-207ENST00000422797 FER1L4A9Z1Z3 1794 aa12.94□□□□□ -0.34
LIMS1-207ENST00000422797 KCNQ3O43525 872 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 TNNT1P13805 278 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 ZSCAN20P17040 1043 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-207ENST00000422797 GABPB1Q06547 395 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-207ENST00000422797 CAMK4Q16566 473 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 CWF19L2Q2TBE0 894 aaKnown RBP12.93□□□□□ -0.34
LIMS1-207ENST00000422797 MCMDC2Q4G0Z9 681 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 RIC3Q7Z5B4 369 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 CKAP2LQ8IYA6 745 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 CEP57L1Q8IYX8 460 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 MPNDQ8N594 471 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 CERKQ8TCT0 537 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 BRF1Q92994 677 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 KAZALD1Q96I82 304 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 CCDC8Q9H0W5 538 aaPredicted RBP12.93□□□□□ -0.34
LIMS1-207ENST00000422797 BOLA2Q9H3K6 86 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 IMPACTQ9P2X3 320 aa12.93□□□□□ -0.34
LIMS1-207ENST00000422797 PALLDQ8WX93 1383 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms