RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PPP2R5BQ15173 497 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC174Q6PII3 467 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 TMC6Q7Z403 805 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 DZIP1Q86YF9 867 aaKnown RBP6.96□□□□□ -1.3
SCN1A-203ENST00000409050 IFT74Q96LB3 600 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 MTRF1LQ9UGC7 380 aaKnown RBP6.96□□□□□ -1.3
SCN1A-203ENST00000409050 TBCAO75347 108 aaKnown RBP6.95□□□□□ -1.3
SCN1A-203ENST00000409050 TNNC1P63316 161 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC14Q49A88 953 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 CFAP58Q5T655 872 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 PODXL2Q9NZ53 605 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 SSX2IPQ9Y2D8 614 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 EBAG9O00559 213 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 ATP2B2Q01814 1243 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 NBPF11Q86T75 865 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 CRACR2BQ8N4Y2 399 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-203ENST00000409050 SSH1Q8WYL5 1049 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 IQCGQ9H095 443 aaKnown RBP6.95□□□□□ -1.3
SCN1A-203ENST00000409050 ANAPC4Q9UJX5 808 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 PTPN23Q9H3S7 1636 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 CTAGE9A4FU28 777 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 AKR1B10O60218 316 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 ZFYVE9O95405 1425 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 KRT13P13646 458 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 GJB2P29033 226 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 SYKP43405 635 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 VAV2P52735 878 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 NUCB1Q02818 461 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 POTEDQ86YR6 584 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 PRDM11Q9NQV5 511 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 ERCC6LQ2NKX8 1250 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 CNGA4Q8IV77 575 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 SMC5Q8IY18 1101 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 CRNKL1Q9BZJ0 848 aaKnown RBP6.95□□□□□ -1.3
SCN1A-203ENST00000409050 TMOD3Q9NYL9 352 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 ORC3Q9UBD5 711 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-203ENST00000409050 KCNG1Q9UIX4 513 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 N4BP3O15049 544 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 NOL3O60936 208 aaKnown RBP6.95□□□□□ -1.3
SCN1A-203ENST00000409050 PLCG2P16885 1265 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 METAP2P50579 478 aaKnown RBP eCLIP6.95□□□□□ -1.3
SCN1A-203ENST00000409050 GNG11P61952 73 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 PPP1R42Q7Z4L9 355 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 MAATS1Q7Z4T9 603 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 SIL1Q9H173 461 aa6.95□□□□□ -1.3
SCN1A-203ENST00000409050 MAP7Q14244 749 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 KAT14Q9H8E8 782 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 CABP5Q9NP86 173 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 OGFRQ9NZT2 677 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 TSKSQ9UJT2 592 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 USP16Q9Y5T5 823 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 MFSD6Q6ZSS7 791 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 SPATS2Q86XZ4 545 aaKnown RBP6.94□□□□□ -1.3
SCN1A-203ENST00000409050 ESR2Q92731 530 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 RPGRIP1Q96KN7 1286 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC113Q9H0I3 377 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 STIM2Q9P246 746 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 POLR3AO14802 1390 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-203ENST00000409050 UBASH3AP57075 661 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 NOLC1Q14978 699 aaKnown RBP eCLIP6.94□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC121Q6ZUS5 278 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 GABPB1Q06547 395 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-203ENST00000409050 KIF5AQ12840 1032 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 ZSCAN29Q8IWY8 852 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-203ENST00000409050 PPFIBP2Q8ND30 876 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 GOPCQ9HD26 462 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 CWC25Q9NXE8 425 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-203ENST00000409050 PPIP5K1Q6PFW1 1433 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 SYNJ1O43426 1573 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 WDR97A6NE52 1622 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 TMCO5BA8MYB1 307 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 SNX16P57768 344 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 SETDB1Q15047 1291 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 MSL1Q68DK7 614 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 WDR66Q8TBY9 1149 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 BCAP29Q9UHQ4 241 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 MTUS1Q9ULD2 1270 aa6.94□□□□□ -1.3
SCN1A-203ENST00000409050 FLIIQ13045 1269 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 CCDC6Q16204 474 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 PPP2R5EQ16537 467 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 ZSCAN23Q3MJ62 389 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 TMEM67Q5HYA8 995 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 WDR78Q5VTH9 848 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 AFAP1Q8N556 730 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 PPP1R14CQ8TAE6 165 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 TRIM47Q96LD4 638 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 SPAG5Q96R06 1193 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 IL1RAPL2Q9NP60 686 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 IMPACTQ9P2X3 320 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 ERICH4A6NGS2 130 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 SMAP1Q8IYB5 467 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 TRIM7Q9C029 511 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 RBM28Q9NW13 759 aaKnown RBP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 RPL13P26373 211 aaKnown RBP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 LMAN1P49257 510 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 MAP3K9P80192 1104 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 DNAJC21Q5F1R6 531 aaKnown RBP6.93□□□□□ -1.3
SCN1A-203ENST00000409050 TBC1D9Q6ZT07 1266 aa6.93□□□□□ -1.3
SCN1A-203ENST00000409050 HDXQ7Z353 690 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms