RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 ADAMTS12P58397 1594 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 ZBTB43O43298 467 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 FGFR1OPO95684 399 aaKnown RBP20.98■□□□□ 0.95
COL18A1-204ENST00000400337 ZSCAN23Q3MJ62 389 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 SLC9C2Q5TAH2 1124 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 SLC4A4Q9Y6R1 1079 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 UBA7P41226 1012 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 SEPT7Q16181 437 aaKnown RBP20.98■□□□□ 0.95
COL18A1-204ENST00000400337 CCDC102BQ68D86 513 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 TMC6Q7Z403 805 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 MAP3K19Q56UN5 1328 aa20.98■□□□□ 0.95
COL18A1-204ENST00000400337 ZNF622Q969S3 477 aaKnown RBP eCLIP20.98■□□□□ 0.95
COL18A1-204ENST00000400337 ZFYVE9O95405 1425 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 IL2RBP14784 551 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 KCNA6P17658 529 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 JAKMIP3Q5VZ66 844 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 Q6ZUG5 572 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 TAX1BP1Q86VP1 789 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 CALML4Q96GE6 196 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 CNPY2Q9Y2B0 182 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 HCLS1P14317 486 aaPredicted RBP20.97■□□□□ 0.95
COL18A1-204ENST00000400337 KRT23Q9C075 422 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 NIP7Q9Y221 180 aaKnown RBP eCLIP20.97■□□□□ 0.95
COL18A1-204ENST00000400337 SHANK2Q9UPX8 1470 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 HOXC9P31274 260 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 SETDB2Q96T68 719 aa20.97■□□□□ 0.95
COL18A1-204ENST00000400337 PRKCSHP14314 528 aaPredicted RBP20.96■□□□□ 0.95
COL18A1-204ENST00000400337 CASQ1P31415 396 aa20.96■□□□□ 0.95
COL18A1-204ENST00000400337 C19orf44Q9H6X5 657 aa20.96■□□□□ 0.95
COL18A1-204ENST00000400337 PAG1Q9NWQ8 432 aa20.96■□□□□ 0.95
COL18A1-204ENST00000400337 HLA-DOAP06340 250 aa20.96■□□□□ 0.95
COL18A1-204ENST00000400337 C16orf45Q96MC5 204 aaPredicted RBP20.96■□□□□ 0.95
COL18A1-204ENST00000400337 YTHDC2Q9H6S0 1430 aaKnown RBP20.96■□□□□ 0.95
COL18A1-204ENST00000400337 KIF20AO95235 890 aa20.96■□□□□ 0.95
COL18A1-204ENST00000400337 ALG1Q9BT22 464 aa20.96■□□□□ 0.95
COL18A1-204ENST00000400337 TNNT1P13805 278 aa20.96■□□□□ 0.95
COL18A1-204ENST00000400337 MTIF2P46199 727 aaKnown RBP20.96■□□□□ 0.95
COL18A1-204ENST00000400337 ST5P78524 1137 aa20.95■□□□□ 0.95
COL18A1-204ENST00000400337 RBM25P49756 843 aaKnown RBP20.95■□□□□ 0.94
COL18A1-204ENST00000400337 DDB1Q16531 1140 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 TMCO3Q6UWJ1 677 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 NLRP3Q96P20 1036 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 FEZ1Q99689 392 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 ARHGEF12Q9NZN5 1544 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 TTC41PQ6P2S7 1318 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 YEATS4O95619 227 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 IBSPP21815 317 aaPredicted RBP20.95■□□□□ 0.94
COL18A1-204ENST00000400337 ESR2Q92731 530 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 TDRD12Q587J7 1177 aaKnown RBP20.95■□□□□ 0.94
COL18A1-204ENST00000400337 SIRT1Q96EB6 747 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 POTEJP0CG39 1038 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 AMPD3Q01432 767 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 VPS36Q86VN1 386 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 SMC5Q8IY18 1101 aa20.95■□□□□ 0.94
COL18A1-204ENST00000400337 GSDMDP57764 484 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 SNX21Q969T3 373 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 GSTO1P78417 241 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 TRMT1LQ7Z2T5 733 aaKnown RBP20.94■□□□□ 0.94
COL18A1-204ENST00000400337 CABP5Q9NP86 173 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 ZMYM3Q14202 1370 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 NEMFO60524 1076 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 DZIP3Q86Y13 1208 aaKnown RBP20.94■□□□□ 0.94
COL18A1-204ENST00000400337 PLEKHM2Q8IWE5 1019 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 ANKRD62A6NC57 917 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 WDR78Q5VTH9 848 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 USP48Q86UV5 1035 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 KRI1Q8N9T8 703 aaKnown RBP20.94■□□□□ 0.94
COL18A1-204ENST00000400337 TMX1Q9H3N1 280 aa20.94■□□□□ 0.94
COL18A1-204ENST00000400337 SYKP43405 635 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 DNA2P51530 1060 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 CHMP4BP1P59074 171 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 IFIT1BQ5T764 474 aaKnown RBP20.93■□□□□ 0.94
COL18A1-204ENST00000400337 PZPP20742 1482 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 KANK3Q6NY19 840 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 DCAF5Q96JK2 942 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 UTP14AQ9BVJ6 771 aaKnown RBP20.93■□□□□ 0.94
COL18A1-204ENST00000400337 CNNM2Q9H8M5 875 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 RNMTO43148 476 aaKnown RBP20.93■□□□□ 0.94
COL18A1-204ENST00000400337 RTN1Q16799 776 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 TAF3Q5VWG9 929 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 NAA16Q6N069 864 aaPredicted RBP20.93■□□□□ 0.94
COL18A1-204ENST00000400337 IP6K1Q92551 441 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 EHMT1Q9H9B1 1298 aa20.93■□□□□ 0.94
COL18A1-204ENST00000400337 TSPY3P0CV98 308 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 TSPY8P0CW00 308 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 PPP4R3AQ6IN85 833 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 LRSAM1Q6UWE0 723 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 TMTC2Q8N394 836 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 SCLT1Q96NL6 688 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 CFAP43Q8NDM7 1665 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 DESP17661 470 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 TFCP2Q12800 502 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 SOS1Q07889 1333 aaPredicted RBP20.92■□□□□ 0.94
COL18A1-204ENST00000400337 KIAA0754O94854 1291 aa20.92■□□□□ 0.94
COL18A1-204ENST00000400337 SMARCC1Q92922 1105 aaPredicted RBP20.91■□□□□ 0.94
COL18A1-204ENST00000400337 CRACR2AQ9BSW2 395 aa20.91■□□□□ 0.94
COL18A1-204ENST00000400337 GBP3Q9H0R5 595 aa20.91■□□□□ 0.94
COL18A1-204ENST00000400337 CAVIN2O95810 425 aa20.91■□□□□ 0.94
COL18A1-204ENST00000400337 UVSSAQ2YD98 709 aa20.91■□□□□ 0.94
COL18A1-204ENST00000400337 HELBQ8NG08 1087 aaPredicted RBP20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms