RNA–Protein interactions for RNA: ENST00000395453.2

SCAF11-203, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SCAF11, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-203ENST00000395453 ANXA1P04083 346 aa17.66■□□□□ 0.42
SCAF11-203ENST00000395453 HOXA10P31260 410 aaPredicted RBP17.66■□□□□ 0.42
SCAF11-203ENST00000395453 EPS15P42566 896 aa17.66■□□□□ 0.42
SCAF11-203ENST00000395453 SCNN1DP51172 638 aa17.66■□□□□ 0.42
SCAF11-203ENST00000395453 FMR1Q06787 632 aaKnown RBP eCLIP17.66■□□□□ 0.426e-11■□□□□ 10.5
SCAF11-203ENST00000395453 KRT24Q2M2I5 525 aa17.66■□□□□ 0.42
SCAF11-203ENST00000395453 GRIPAP1Q4V328 841 aa17.66■□□□□ 0.42
SCAF11-203ENST00000395453 CST9Q5W186 159 aa17.66■□□□□ 0.42
SCAF11-203ENST00000395453 CFAP44Q96MT7 982 aa17.66■□□□□ 0.42
SCAF11-203ENST00000395453 TLL2Q9Y6L7 1015 aa17.66■□□□□ 0.42
SCAF11-203ENST00000395453 SNED1Q8TER0 1413 aa17.65■□□□□ 0.42
SCAF11-203ENST00000395453 PARP10Q53GL7 1025 aa17.65■□□□□ 0.42
SCAF11-203ENST00000395453 COPS6Q7L5N1 327 aa17.65■□□□□ 0.42
SCAF11-203ENST00000395453 LAS1LQ9Y4W2 734 aaKnown RBP17.65■□□□□ 0.42
SCAF11-203ENST00000395453 TRAF5O00463 557 aa17.64■□□□□ 0.41
SCAF11-203ENST00000395453 HOXB7P09629 217 aa17.64■□□□□ 0.41
SCAF11-203ENST00000395453 ZNF853P0CG23 659 aa17.64■□□□□ 0.41
SCAF11-203ENST00000395453 FXR2P51116 673 aaKnown RBP eCLIP17.64■□□□□ 0.413e-9■■■□□ 15.9
SCAF11-203ENST00000395453 PPP1R42Q7Z4L9 355 aa17.64■□□□□ 0.41
SCAF11-203ENST00000395453 LARGE2Q8N3Y3 721 aa17.64■□□□□ 0.41
SCAF11-203ENST00000395453 NECTIN2Q92692 538 aa17.64■□□□□ 0.41
SCAF11-203ENST00000395453 TSKSQ9UJT2 592 aa17.64■□□□□ 0.41
SCAF11-203ENST00000395453 APAF1O14727 1248 aa17.63■□□□□ 0.41
SCAF11-203ENST00000395453 ZEB1P37275 1124 aaPredicted RBP17.63■□□□□ 0.41
SCAF11-203ENST00000395453 SLC10A5Q5PT55 438 aa17.63■□□□□ 0.41
SCAF11-203ENST00000395453 XAGE3Q8WTP9 111 aa17.63■□□□□ 0.41
SCAF11-203ENST00000395453 TRPM7Q96QT4 1865 aa17.63■□□□□ 0.41
SCAF11-203ENST00000395453 LTBP1Q14766 1721 aa17.62■□□□□ 0.41
SCAF11-203ENST00000395453 AOC2O75106 756 aa17.62■□□□□ 0.41
SCAF11-203ENST00000395453 RPGRQ92834 1020 aaKnown RBP17.62■□□□□ 0.41
SCAF11-203ENST00000395453 MCOLN1Q9GZU1 580 aa17.62■□□□□ 0.41
SCAF11-203ENST00000395453 SPDYE2BA6NHP3 402 aa17.61■□□□□ 0.41
SCAF11-203ENST00000395453 SPDYE6P0CI01 402 aa17.61■□□□□ 0.41
SCAF11-203ENST00000395453 AIMP1Q12904 312 aaKnown RBP17.61■□□□□ 0.41
SCAF11-203ENST00000395453 SPDYE2Q495Y8 402 aa17.61■□□□□ 0.41
SCAF11-203ENST00000395453 SAPCD2Q86UD0 394 aa17.61■□□□□ 0.41
SCAF11-203ENST00000395453 HHIPL1Q96JK4 782 aa17.61■□□□□ 0.41
SCAF11-203ENST00000395453 CRAMP1Q96RY5 1269 aa17.61■□□□□ 0.41
SCAF11-203ENST00000395453 UTP14AQ9BVJ6 771 aaKnown RBP17.61■□□□□ 0.41
SCAF11-203ENST00000395453 MBIPQ9NS73 344 aa17.61■□□□□ 0.41
SCAF11-203ENST00000395453 COL4A5P29400 1685 aa17.61■□□□□ 0.41
SCAF11-203ENST00000395453 BRPF1P55201 1214 aaPredicted RBP17.6■□□□□ 0.41
SCAF11-203ENST00000395453 TCIRG1Q13488 830 aa17.6■□□□□ 0.41
SCAF11-203ENST00000395453 HSP90AB3PQ58FF7 597 aa17.6■□□□□ 0.41
SCAF11-203ENST00000395453 HDGFL1Q5TGJ6 251 aa17.6■□□□□ 0.41
SCAF11-203ENST00000395453 C3orf67Q6ZVT6 689 aa17.6■□□□□ 0.41
SCAF11-203ENST00000395453 NLRP10Q86W26 655 aa17.6■□□□□ 0.41
SCAF11-203ENST00000395453 NIM1KQ8IY84 436 aa17.6■□□□□ 0.41
SCAF11-203ENST00000395453 ADARB2Q9NS39 739 aaKnown RBP17.6■□□□□ 0.41
SCAF11-203ENST00000395453 CHPF2Q9P2E5 772 aa17.6■□□□□ 0.41
SCAF11-203ENST00000395453 ANKRD36CQ5JPF3 1778 aa17.6■□□□□ 0.41
SCAF11-203ENST00000395453 CELF2O95319 508 aaKnown RBP17.59■□□□□ 0.41
SCAF11-203ENST00000395453 CCDC184Q52MB2 194 aa17.59■□□□□ 0.41
SCAF11-203ENST00000395453 DUSP27Q5VZP5 1158 aa17.59■□□□□ 0.41
SCAF11-203ENST00000395453 RBM17Q96I25 401 aaKnown RBP17.59■□□□□ 0.41
SCAF11-203ENST00000395453 NLRP3Q96P20 1036 aa17.59■□□□□ 0.41
SCAF11-203ENST00000395453 IFT57Q9NWB7 429 aa17.59■□□□□ 0.41
SCAF11-203ENST00000395453 DBF4Q9UBU7 674 aaPredicted RBP17.59■□□□□ 0.41
SCAF11-203ENST00000395453 GPRC5DQ9NZD1 345 aa17.58■□□□□ 0.4
SCAF11-203ENST00000395453 PDE4DIPQ5VU43 2346 aa17.57■□□□□ 0.4
SCAF11-203ENST00000395453 GNAI1P63096 354 aa17.57■□□□□ 0.4
SCAF11-203ENST00000395453 CALD1Q05682 793 aaKnown RBP17.57■□□□□ 0.4
SCAF11-203ENST00000395453 DGKZQ13574 1117 aa17.57■□□□□ 0.4
SCAF11-203ENST00000395453 ANKRD13DQ6ZTN6 518 aa17.57■□□□□ 0.4
SCAF11-203ENST00000395453 PLBD2Q8NHP8 589 aa17.57■□□□□ 0.4
SCAF11-203ENST00000395453 TMX4Q9H1E5 349 aaPredicted RBP17.57■□□□□ 0.4
SCAF11-203ENST00000395453 VPS33BQ9H267 617 aa17.57■□□□□ 0.4
SCAF11-203ENST00000395453 CASP8AP2Q9UKL3 1982 aa17.57■□□□□ 0.4
SCAF11-203ENST00000395453 PPEF1O14829 653 aaPredicted RBP17.56■□□□□ 0.4
SCAF11-203ENST00000395453 PPIP5K2O43314 1243 aa17.56■□□□□ 0.4
SCAF11-203ENST00000395453 HYPKQ9NX55 129 aa17.56■□□□□ 0.4
SCAF11-203ENST00000395453 TNRC18O15417 2968 aaPredicted RBP17.56■□□□□ 0.4
SCAF11-203ENST00000395453 TCERG1O14776 1098 aaKnown RBP17.54■□□□□ 0.4
SCAF11-203ENST00000395453 AOC3Q16853 763 aa17.54■□□□□ 0.4
SCAF11-203ENST00000395453 CIAPIN1Q6FI81 312 aa17.54■□□□□ 0.4
SCAF11-203ENST00000395453 ISCA1Q9BUE6 129 aa17.54■□□□□ 0.4
SCAF11-203ENST00000395453 GLIS2Q9BZE0 524 aaPredicted RBP17.54■□□□□ 0.4
SCAF11-203ENST00000395453 PGAP2Q9UHJ9 254 aa17.54■□□□□ 0.4
SCAF11-203ENST00000395453 TRMT112Q9UI30 125 aaKnown RBP17.54■□□□□ 0.4
SCAF11-203ENST00000395453 HCLS1P14317 486 aaPredicted RBP17.53■□□□□ 0.4
SCAF11-203ENST00000395453 CXCL9Q07325 125 aa17.53■□□□□ 0.4
SCAF11-203ENST00000395453 NOGQ13253 232 aa17.53■□□□□ 0.4
SCAF11-203ENST00000395453 TRIM28Q13263 835 aaKnown RBP17.53■□□□□ 0.4
SCAF11-203ENST00000395453 SLC51AQ86UW1 340 aa17.53■□□□□ 0.4
SCAF11-203ENST00000395453 ZC3H15Q8WU90 426 aaKnown RBP17.53■□□□□ 0.4
SCAF11-203ENST00000395453 ZNRF3Q9ULT6 936 aa17.53■□□□□ 0.4
SCAF11-203ENST00000395453 ATP6V0A2Q9Y487 856 aa17.53■□□□□ 0.4
SCAF11-203ENST00000395453 LAMB2P55268 1798 aa17.53■□□□□ 0.4
SCAF11-203ENST00000395453 SH3TC1Q8TE82 1336 aa17.53■□□□□ 0.4
SCAF11-203ENST00000395453 ZNF316A6NFI3 1004 aaPredicted RBP17.52■□□□□ 0.4
SCAF11-203ENST00000395453 BBOX1O75936 387 aa17.52■□□□□ 0.4
SCAF11-203ENST00000395453 CCDC27Q2M243 656 aa17.52■□□□□ 0.4
SCAF11-203ENST00000395453 C8orf58Q8NAV2 365 aa17.52■□□□□ 0.4
SCAF11-203ENST00000395453 SUPT20HQ8NEM7 779 aa17.52■□□□□ 0.4
SCAF11-203ENST00000395453 ZNF408Q9H9D4 720 aa17.52■□□□□ 0.4
SCAF11-203ENST00000395453 ABCC4O15439 1325 aa17.52■□□□□ 0.4
SCAF11-203ENST00000395453 CDHR2Q9BYE9 1310 aa17.52■□□□□ 0.4
SCAF11-203ENST00000395453 GMPSP49915 693 aaPredicted RBP17.51■□□□□ 0.39
SCAF11-203ENST00000395453 CDC37L1Q7L3B6 337 aa17.51■□□□□ 0.39
SCAF11-203ENST00000395453 ELL2O00472 640 aaPredicted RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms