RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.36□□□□□ -0.43
COL6A3-205ENST00000392004 ZBTB7BO15156 539 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-205ENST00000392004 REC8O95072 547 aa12.35□□□□□ -0.43
COL6A3-205ENST00000392004 ATP8B2P98198 1209 aa12.35□□□□□ -0.43
COL6A3-205ENST00000392004 EDC3Q96F86 508 aaKnown RBP12.35□□□□□ -0.43
COL6A3-205ENST00000392004 CTDP1Q9Y5B0 961 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-205ENST00000392004 KIF24Q5T7B8 1368 aa12.35□□□□□ -0.43
COL6A3-205ENST00000392004 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-205ENST00000392004 C21orf2O43822 256 aa12.35□□□□□ -0.43
COL6A3-205ENST00000392004 HOXB7P09629 217 aa12.35□□□□□ -0.43
COL6A3-205ENST00000392004 A0A0G2JLW4 131 aa12.35□□□□□ -0.43
COL6A3-205ENST00000392004 DBNDD2Q9BQY9 259 aa12.35□□□□□ -0.43
COL6A3-205ENST00000392004 CD163L1Q9NR16 1453 aa12.35□□□□□ -0.43
COL6A3-205ENST00000392004 CCDC82Q8N4S0 544 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 RBM17Q96I25 401 aaKnown RBP12.34□□□□□ -0.43
COL6A3-205ENST00000392004 TMOD2Q9NZR1 351 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 MED14O60244 1454 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 LAMC1P11047 1609 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 GYG1P46976 350 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 STK3Q13188 491 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 NCOA3Q9Y6Q9 1424 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 PPIP5K2O43314 1243 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 CDC45O75419 566 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 BEND3Q5T5X7 828 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 NLRP10Q86W26 655 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 OGFOD1Q8N543 542 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 ANKRD44Q8N8A2 993 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 ECHDC1Q9NTX5 307 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 MEGF6O75095 1541 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 POLR3DP05423 398 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-205ENST00000392004 RRAGDQ9NQL2 400 aaPredicted RBP12.34□□□□□ -0.43
COL6A3-205ENST00000392004 ZBTB40Q9NUA8 1239 aa12.34□□□□□ -0.43
COL6A3-205ENST00000392004 A0A1B0GUL7 405 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 NFIXQ14938 502 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 MCTP1Q6DN14 999 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 FLAD1Q8NFF5 587 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 CWC22Q9HCG8 908 aaKnown RBP12.33□□□□□ -0.44
COL6A3-205ENST00000392004 GLRX3O76003 335 aaKnown RBP12.33□□□□□ -0.44
COL6A3-205ENST00000392004 ZNF853P0CG23 659 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 CRACR2BQ8N4Y2 399 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-205ENST00000392004 UPF3BQ9BZI7 483 aaKnown RBP12.33□□□□□ -0.44
COL6A3-205ENST00000392004 BABAM1Q9NWV8 329 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 CPLX1O14810 134 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 IL15P40933 162 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-205ENST00000392004 MAP3K12Q12852 859 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 RAB11FIP4Q86YS3 637 aa12.33□□□□□ -0.44
COL6A3-205ENST00000392004 ATP2B1P20020 1258 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 HSP90AA2PQ14568 343 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-205ENST00000392004 SYNE3Q6ZMZ3 975 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 EAPPQ56P03 285 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-205ENST00000392004 MPNDQ8N594 471 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 DBNDD1Q9H9R9 158 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 OVOS2A0A0G2JMS6 1433 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 EYA2O00167 538 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 CTSWP56202 376 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 SLC9C2Q5TAH2 1124 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 ZBTB38Q8NAP3 1195 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-205ENST00000392004 NUP133Q8WUM0 1156 aa12.32□□□□□ -0.44
COL6A3-205ENST00000392004 NEK4P51957 841 aa12.31□□□□□ -0.44
COL6A3-205ENST00000392004 TRIM44Q96DX7 344 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-205ENST00000392004 GGA1Q9UJY5 639 aa12.31□□□□□ -0.44
COL6A3-205ENST00000392004 ERICH2A1L162 156 aa12.31□□□□□ -0.44
COL6A3-205ENST00000392004 CYP7A1P22680 504 aa12.31□□□□□ -0.44
COL6A3-205ENST00000392004 GTF2IP78347 998 aa12.31□□□□□ -0.44
COL6A3-205ENST00000392004 KIAA0825Q8IV33 1275 aa12.31□□□□□ -0.44
COL6A3-205ENST00000392004 TCEANC2Q96MN5 208 aa12.31□□□□□ -0.44
COL6A3-205ENST00000392004 CPDO75976 1380 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 RAB11FIP3O75154 756 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 RAD17O75943 681 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 SEC24BO95487 1268 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 IGKV5-2P06315 115 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 AKAP17AQ02040 695 aaKnown RBP12.3□□□□□ -0.44
COL6A3-205ENST00000392004 EPHA10Q5JZY3 1008 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 RNF20Q5VTR2 975 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-205ENST00000392004 BCAMP50895 628 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 C22orf23Q9BZE7 217 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 PDE6BP35913 854 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 SCNN1DP51172 638 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 NACAP1Q9BZK3 213 aa12.3□□□□□ -0.44
COL6A3-205ENST00000392004 GOLGA6L4A6NEF3 574 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 RANBP6O60518 1105 aaKnown RBP12.29□□□□□ -0.44
COL6A3-205ENST00000392004 WDR78Q5VTH9 848 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 CCAR1Q8IX12 1150 aaKnown RBP12.29□□□□□ -0.44
COL6A3-205ENST00000392004 VSIG10Q8N0Z9 540 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 PKNOX2Q96KN3 472 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 NARFQ9UHQ1 456 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 ST18O60284 1047 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 DTNBO60941 627 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 TCP10Q12799 353 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 NAPBQ9H115 298 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 CHMP5Q9NZZ3 219 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 ZNF521Q96K83 1311 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 MARCH6O60337 910 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 MCM4P33991 863 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 SLC15A2Q16348 729 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 MKNK2Q9HBH9 465 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 COL15A1P39059 1388 aa12.29□□□□□ -0.44
COL6A3-205ENST00000392004 COL5A2P05997 1499 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-205ENST00000392004 PRPF40BQ6NWY9 871 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms