RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 CATIPQ7Z7H3 387 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 GOLGA6L10A6NI86 522 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 TXLNBQ8N3L3 684 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 NCOA7Q8NI08 942 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 FSIP1Q8NA03 581 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 CLIP2Q9UDT6 1046 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 BAG3O95817 575 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 AK2P54819 239 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 SSRP1Q08945 709 aaKnown RBP17.41■□□□□ 0.38
NPHP4-201ENST00000378156 CFAP100Q494V2 611 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 TMEM67Q5HYA8 995 aa17.41■□□□□ 0.38
NPHP4-201ENST00000378156 LUC7LQ9NQ29 371 aaKnown RBP17.41■□□□□ 0.38
NPHP4-201ENST00000378156 ERLIN2O94905 339 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 RAB11FIP4Q86YS3 637 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 ANKRD18AQ8IVF6 992 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 ZNF830Q96NB3 372 aaPredicted RBP17.4■□□□□ 0.38
NPHP4-201ENST00000378156 PDCL3Q9H2J4 239 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 SBNO1A3KN83 1393 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 IARSP41252 1262 aaKnown RBP17.4■□□□□ 0.38
NPHP4-201ENST00000378156 DNM1Q05193 864 aaKnown RBP17.4■□□□□ 0.38
NPHP4-201ENST00000378156 DDX21Q9NR30 783 aaKnown RBP eCLIP17.4■□□□□ 0.38
NPHP4-201ENST00000378156 KDM5AP29375 1690 aaKnown RBP17.4■□□□□ 0.38
NPHP4-201ENST00000378156 SYCP1Q15431 976 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 SPTY2D1Q68D10 685 aaPredicted RBP17.4■□□□□ 0.38
NPHP4-201ENST00000378156 MFSD6Q6ZSS7 791 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 SETDB2Q96T68 719 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 NEO1Q92859 1461 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 ZNF165P49910 485 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 NLRP3Q96P20 1036 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 DEF6Q9H4E7 631 aa17.4■□□□□ 0.38
NPHP4-201ENST00000378156 ZNF219Q9P2Y4 722 aaPredicted RBP17.4■□□□□ 0.38
NPHP4-201ENST00000378156 SIRT1Q96EB6 747 aa17.39■□□□□ 0.38
NPHP4-201ENST00000378156 ORC3Q9UBD5 711 aaPredicted RBP17.39■□□□□ 0.38
NPHP4-201ENST00000378156 NIP7Q9Y221 180 aaKnown RBP eCLIP17.39■□□□□ 0.38
NPHP4-201ENST00000378156 C8orf37Q96NL8 207 aa17.39■□□□□ 0.37
NPHP4-201ENST00000378156 F13A1P00488 732 aa17.39■□□□□ 0.37
NPHP4-201ENST00000378156 NMIQ13287 307 aaPredicted RBP17.39■□□□□ 0.37
NPHP4-201ENST00000378156 MCM5P33992 734 aa17.39■□□□□ 0.37
NPHP4-201ENST00000378156 MICU3Q86XE3 530 aa17.39■□□□□ 0.37
NPHP4-201ENST00000378156 UGGT1Q9NYU2 1555 aa17.39■□□□□ 0.37
NPHP4-201ENST00000378156 CPA1P15085 419 aa17.38■□□□□ 0.37
NPHP4-201ENST00000378156 DZIP3Q86Y13 1208 aaKnown RBP17.38■□□□□ 0.37
NPHP4-201ENST00000378156 PDE4BQ07343 736 aa17.38■□□□□ 0.37
NPHP4-201ENST00000378156 UVSSAQ2YD98 709 aa17.38■□□□□ 0.37
NPHP4-201ENST00000378156 PLEKHF1Q96S99 279 aa17.38■□□□□ 0.37
NPHP4-201ENST00000378156 BABAM1Q9NWV8 329 aa17.38■□□□□ 0.37
NPHP4-201ENST00000378156 SFPQP23246 707 aaKnown RBP eCLIP17.38■□□□□ 0.37
NPHP4-201ENST00000378156 TSPY2A6NKD2 308 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 UBXN4Q92575 508 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 TMEM2Q9UHN6 1383 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 CCDC96Q2M329 555 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 MCMDC2Q4G0Z9 681 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 C16orf45Q96MC5 204 aaPredicted RBP17.37■□□□□ 0.37
NPHP4-201ENST00000378156 TTC41PQ6P2S7 1318 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 PNMA6EA0A0J9YXQ4 647 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 CCDC194A0A1B0GVG4 234 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 PLEKHG3A1L390 1219 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 BIN1O00499 593 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 NLRP5P59047 1200 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 PTPN14Q15678 1187 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 CTAGE5O15320 804 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 IQCEQ6IPM2 695 aa17.37■□□□□ 0.37
NPHP4-201ENST00000378156 PCDH11XQ9BZA7 1347 aa17.36■□□□□ 0.37
NPHP4-201ENST00000378156 PCDH11YQ9BZA8 1340 aa17.36■□□□□ 0.37
NPHP4-201ENST00000378156 INTS4Q96HW7 963 aaKnown RBP17.36■□□□□ 0.37
NPHP4-201ENST00000378156 METAP2P50579 478 aaKnown RBP eCLIP17.36■□□□□ 0.37
NPHP4-201ENST00000378156 WWC2Q6AWC2 1192 aa17.36■□□□□ 0.37
NPHP4-201ENST00000378156 UTP14AQ9BVJ6 771 aaKnown RBP17.36■□□□□ 0.37
NPHP4-201ENST00000378156 KDM5DQ9BY66 1539 aa17.36■□□□□ 0.37
NPHP4-201ENST00000378156 KIF5BP33176 963 aa17.36■□□□□ 0.37
NPHP4-201ENST00000378156 ZNF790Q6PG37 636 aa17.36■□□□□ 0.37
NPHP4-201ENST00000378156 CCDC144CPQ8IYA2 1237 aa17.36■□□□□ 0.37
NPHP4-201ENST00000378156 IQSEC3Q9UPP2 1182 aaPredicted RBP17.36■□□□□ 0.37
NPHP4-201ENST00000378156 CNKSR2Q8WXI2 1034 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 GBP3Q9H0R5 595 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 ST5P78524 1137 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 CRNKL1Q9BZJ0 848 aaKnown RBP17.35■□□□□ 0.37
NPHP4-201ENST00000378156 TRMT1Q9NXH9 659 aaKnown RBP17.35■□□□□ 0.37
NPHP4-201ENST00000378156 TTC37Q6PGP7 1564 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 BTG4Q9NY30 223 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 ABCC4O15439 1325 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 MYO5CQ9NQX4 1742 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 SLC9C2Q5TAH2 1124 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 DACT1Q9NYF0 836 aa17.35■□□□□ 0.37
NPHP4-201ENST00000378156 GSPT1P15170 499 aaKnown RBP17.34■□□□□ 0.37
NPHP4-201ENST00000378156 CYP7A1P22680 504 aa17.34■□□□□ 0.37
NPHP4-201ENST00000378156 SYNMO15061 1565 aa17.34■□□□□ 0.37
NPHP4-201ENST00000378156 HOXB7P09629 217 aa17.34■□□□□ 0.37
NPHP4-201ENST00000378156 ZRSR2Q15696 482 aaKnown RBP17.34■□□□□ 0.37
NPHP4-201ENST00000378156 BCORL1Q5H9F3 1711 aa17.34■□□□□ 0.37
NPHP4-201ENST00000378156 TMCO3Q6UWJ1 677 aa17.34■□□□□ 0.37
NPHP4-201ENST00000378156 ZNF622Q969S3 477 aaKnown RBP eCLIP17.34■□□□□ 0.37
NPHP4-201ENST00000378156 RAB34Q9BZG1 259 aa17.34■□□□□ 0.37
NPHP4-201ENST00000378156 TNNT1P13805 278 aa17.34■□□□□ 0.37
NPHP4-201ENST00000378156 CREB3L3Q68CJ9 461 aa17.34■□□□□ 0.37
NPHP4-201ENST00000378156 RRAGDQ9NQL2 400 aaPredicted RBP17.34■□□□□ 0.37
NPHP4-201ENST00000378156 PRDM15P57071 1507 aaPredicted RBP17.34■□□□□ 0.37
NPHP4-201ENST00000378156 LTKP29376 864 aa17.33■□□□□ 0.37
NPHP4-201ENST00000378156 CCDC181Q5TID7 509 aa17.33■□□□□ 0.37
NPHP4-201ENST00000378156 Q6ZUG5 572 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms