RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 SMC2O95347 1197 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 CLCN6P51797 869 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 HNRNPH2P55795 449 aaKnown RBP18.6■□□□□ 0.57
CKAP4-201ENST00000378026 RESTQ13127 1097 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 RNF20Q5VTR2 975 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 SARM1Q6SZW1 724 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 ZNF589Q86UQ0 364 aaPredicted RBP18.6■□□□□ 0.57
CKAP4-201ENST00000378026 DHX40Q8IX18 779 aaKnown RBP18.6■□□□□ 0.57
CKAP4-201ENST00000378026 USHBP1Q8N6Y0 703 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 GUCY1B3Q02153 619 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 BEND3Q5T5X7 828 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 HOMER1Q86YM7 354 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 TLR7Q9NYK1 1049 aaKnown RBP18.6■□□□□ 0.57
CKAP4-201ENST00000378026 CAPN2P17655 700 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 FAM53CQ9NYF3 392 aa18.6■□□□□ 0.57
CKAP4-201ENST00000378026 KINO60870 393 aaKnown RBP18.59■□□□□ 0.57
CKAP4-201ENST00000378026 CCDC73Q6ZRK6 1079 aa18.59■□□□□ 0.57
CKAP4-201ENST00000378026 TMC6Q7Z403 805 aa18.59■□□□□ 0.57
CKAP4-201ENST00000378026 CFAP45Q9UL16 551 aa18.59■□□□□ 0.57
CKAP4-201ENST00000378026 XRN1Q8IZH2 1706 aaKnown RBP18.58■□□□□ 0.57
CKAP4-201ENST00000378026 HTATSF1O43719 755 aaKnown RBP18.58■□□□□ 0.57
CKAP4-201ENST00000378026 E4F1Q66K89 784 aaPredicted RBP18.58■□□□□ 0.57
CKAP4-201ENST00000378026 ZBTB9Q96C00 473 aa18.58■□□□□ 0.57
CKAP4-201ENST00000378026 NEK11Q8NG66 645 aa18.58■□□□□ 0.56
CKAP4-201ENST00000378026 FHOD1Q9Y613 1164 aa18.58■□□□□ 0.56
CKAP4-201ENST00000378026 NDUFB9Q9Y6M9 179 aa18.58■□□□□ 0.56
CKAP4-201ENST00000378026 CHGBP05060 677 aa18.58■□□□□ 0.56
CKAP4-201ENST00000378026 ME1P48163 572 aa18.58■□□□□ 0.56
CKAP4-201ENST00000378026 EAF2Q96CJ1 260 aaPredicted RBP18.58■□□□□ 0.56
CKAP4-201ENST00000378026 PPP1R13BQ96KQ4 1090 aa18.58■□□□□ 0.56
CKAP4-201ENST00000378026 CAVIN2O95810 425 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 Q6ZUG5 572 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 KCNQ3O43525 872 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 PNMA6AP0CW24 399 aaPredicted RBP18.57■□□□□ 0.56
CKAP4-201ENST00000378026 CWF19L2Q2TBE0 894 aaKnown RBP18.57■□□□□ 0.56
CKAP4-201ENST00000378026 CEP57L1Q8IYX8 460 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 FSIP1Q8NA03 581 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 SDF4Q9BRK5 362 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 ANO10Q9NW15 660 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 ADCY9O60503 1353 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 DIP2CQ9Y2E4 1556 aa18.57■□□□□ 0.56
CKAP4-201ENST00000378026 BIN1O00499 593 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 SEC31AO94979 1220 aaKnown RBP18.56■□□□□ 0.56
CKAP4-201ENST00000378026 TRIM34Q9BYJ4 488 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 EPC1Q9H2F5 836 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 PEAK1Q9H792 1746 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 USP42Q9H9J4 1324 aaKnown RBP18.56■□□□□ 0.56
CKAP4-201ENST00000378026 PDIA4P13667 645 aaKnown RBP18.56■□□□□ 0.56
CKAP4-201ENST00000378026 CYP2C19P33261 490 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 SLFNL1Q499Z3 407 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 NBPF11Q86T75 865 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 FAM177A1Q8N128 213 aaPredicted RBP18.56■□□□□ 0.56
CKAP4-201ENST00000378026 USP28Q96RU2 1077 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 IFNKQ9P0W0 207 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 DNAI1Q9UI46 699 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 NRKQ7Z2Y5 1582 aa18.56■□□□□ 0.56
CKAP4-201ENST00000378026 CEP170BQ9Y4F5 1589 aaPredicted RBP18.56■□□□□ 0.56
CKAP4-201ENST00000378026 H2AFXP16104 143 aaPredicted RBP18.55■□□□□ 0.56
CKAP4-201ENST00000378026 PLA2G4AP47712 749 aa18.55■□□□□ 0.56
CKAP4-201ENST00000378026 ISM2Q6H9L7 571 aa18.55■□□□□ 0.56
CKAP4-201ENST00000378026 KLHDC4Q8TBB5 520 aa18.55■□□□□ 0.56
CKAP4-201ENST00000378026 XPO4Q9C0E2 1151 aaKnown RBP18.55■□□□□ 0.56
CKAP4-201ENST00000378026 ZCCHC17Q9NP64 241 aaKnown RBP18.55■□□□□ 0.56
CKAP4-201ENST00000378026 CCT2P78371 535 aaKnown RBP18.55■□□□□ 0.56
CKAP4-201ENST00000378026 CCDC129Q6ZRS4 1044 aa18.55■□□□□ 0.56
CKAP4-201ENST00000378026 CHMP4AQ9BY43 222 aa18.55■□□□□ 0.56
CKAP4-201ENST00000378026 TAOK2Q9UL54 1235 aa18.55■□□□□ 0.56
CKAP4-201ENST00000378026 CCDC9Q9Y3X0 531 aaKnown RBP18.55■□□□□ 0.56
CKAP4-201ENST00000378026 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.55■□□□□ 0.56
CKAP4-201ENST00000378026 ZRSR1Q15695 479 aaKnown RBP18.54■□□□□ 0.56
CKAP4-201ENST00000378026 PTPN21Q16825 1174 aa18.54■□□□□ 0.56
CKAP4-201ENST00000378026 SEC62Q99442 399 aaKnown RBP18.54■□□□□ 0.56
CKAP4-201ENST00000378026 OVOS2A0A0J9YW53 1432 aa18.54■□□□□ 0.56
CKAP4-201ENST00000378026 A0A1B0GVL5 298 aa18.54■□□□□ 0.56
CKAP4-201ENST00000378026 SFPQP23246 707 aaKnown RBP eCLIP18.54■□□□□ 0.56
CKAP4-201ENST00000378026 OVOS2Q6IE36 1432 aa18.54■□□□□ 0.56
CKAP4-201ENST00000378026 ARMCX5Q6P1M9 558 aa18.54■□□□□ 0.56
CKAP4-201ENST00000378026 UBXN4Q92575 508 aa18.54■□□□□ 0.56
CKAP4-201ENST00000378026 TMX1Q9H3N1 280 aa18.54■□□□□ 0.56
CKAP4-201ENST00000378026 C3P01024 1663 aa18.54■□□□□ 0.56
CKAP4-201ENST00000378026 G3BP1Q13283 466 aaKnown RBP eCLIP18.53■□□□□ 0.566e-9■□□□□ 8.4
CKAP4-201ENST00000378026 TMCO3Q6UWJ1 677 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 NEK1Q96PY6 1258 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 IGSF1Q8N6C5 1336 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 CTAGE5O15320 804 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 SASH1O94885 1247 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 GSDMDP57764 484 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 SCRN1Q12765 414 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 DNAJC2Q99543 621 aaKnown RBP18.53■□□□□ 0.56
CKAP4-201ENST00000378026 ZSCAN16Q9H4T2 348 aaPredicted RBP18.53■□□□□ 0.56
CKAP4-201ENST00000378026 KIF2AO00139 706 aaPredicted RBP18.53■□□□□ 0.56
CKAP4-201ENST00000378026 LGR6Q9HBX8 967 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 MAP3K2Q9Y2U5 619 aa18.53■□□□□ 0.56
CKAP4-201ENST00000378026 FLT4P35916 1363 aa18.52■□□□□ 0.56
CKAP4-201ENST00000378026 NPHP4O75161 1426 aaPredicted RBP18.52■□□□□ 0.56
CKAP4-201ENST00000378026 MON2Q7Z3U7 1717 aa18.52■□□□□ 0.56
CKAP4-201ENST00000378026 HIP1O00291 1037 aa18.52■□□□□ 0.56
CKAP4-201ENST00000378026 URI1O94763 535 aaPredicted RBP18.52■□□□□ 0.56
CKAP4-201ENST00000378026 DPCR1Q3MIW9 517 aa18.52■□□□□ 0.56
CKAP4-201ENST00000378026 MNS1Q8NEH6 495 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms