RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 NAA30Q147X3 362 aaPredicted RBP4.69□□□□□ -1.66
VPS13A-206ENST00000376646 IER5Q5VY09 327 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 CD163Q86VB7 1156 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 MICALL1Q8N3F8 863 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 NUDT8Q8WV74 236 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 OPLAHO14841 1288 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 MLLT1Q03111 559 aaPredicted RBP4.69□□□□□ -1.66
VPS13A-206ENST00000376646 NEUROD1Q13562 356 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 IFT43Q96FT9 208 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 PNMA5Q96PV4 448 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 C1orf115Q9H7X2 142 aa4.69□□□□□ -1.66
VPS13A-206ENST00000376646 DNAJB12Q9NXW2 375 aaKnown RBP4.69□□□□□ -1.66
VPS13A-206ENST00000376646 SASH3O75995 380 aa4.68□□□□□ -1.66
VPS13A-206ENST00000376646 CCINQ13939 588 aa4.68□□□□□ -1.66
VPS13A-206ENST00000376646 HIF1AQ16665 826 aa4.68□□□□□ -1.66
VPS13A-206ENST00000376646 C11orf91Q3C1V1 193 aa4.68□□□□□ -1.66
VPS13A-206ENST00000376646 RGL4Q8IZJ4 473 aa4.68□□□□□ -1.66
VPS13A-206ENST00000376646 CCDC97Q96F63 343 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-206ENST00000376646 SLC6A14Q9UN76 642 aa4.68□□□□□ -1.66
VPS13A-206ENST00000376646 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-206ENST00000376646 ATG7O95352 703 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 ELOAQ14241 798 aaKnown RBP4.67□□□□□ -1.66
VPS13A-206ENST00000376646 SWI5Q1ZZU3 235 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 C20orf204Q6ZNR8 217 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 TREML1Q86YW5 311 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 ETFBKMTQ8IXQ9 262 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 MYO19Q96H55 970 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 ARSDP51689 593 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 PLAURQ03405 335 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 CCDC82Q8N4S0 544 aa4.67□□□□□ -1.66
VPS13A-206ENST00000376646 NOP53Q9NZM5 478 aaKnown RBP4.67□□□□□ -1.66
VPS13A-206ENST00000376646 RTCBQ9Y3I0 505 aaKnown RBP4.67□□□□□ -1.66
VPS13A-206ENST00000376646 CARNS1A5YM72 827 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 ZBTB42B2RXF5 422 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 FURINP09958 794 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 NID1P14543 1247 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 CPB1P15086 417 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 GRIK4Q16099 956 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 PSAPL1Q6NUJ1 521 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 HFE2Q6ZVN8 426 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 CMTR1Q8N1G2 835 aaKnown RBP4.66□□□□□ -1.66
VPS13A-206ENST00000376646 CCER1Q8TC90 406 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-206ENST00000376646 PBXIP1Q96AQ6 731 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 JPH1Q9HDC5 661 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-206ENST00000376646 CXXC1Q9P0U4 656 aaPredicted RBP4.66□□□□□ -1.66
VPS13A-206ENST00000376646 BAG6P46379 1132 aa4.66□□□□□ -1.66
VPS13A-206ENST00000376646 PIK3R2O00459 728 aa4.65□□□□□ -1.66
VPS13A-206ENST00000376646 TNFRSF10BO14763 440 aa4.65□□□□□ -1.66
VPS13A-206ENST00000376646 FAM35AQ86V20 835 aa4.65□□□□□ -1.66
VPS13A-206ENST00000376646 SEPT3Q9UH03 358 aa4.65□□□□□ -1.66
VPS13A-206ENST00000376646 ZBTB39O15060 712 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 LILRB5O75023 590 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 XYLBO75191 536 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 RARAP10276 462 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 EPB42P16452 691 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 TRIP4Q15650 581 aaPredicted RBP4.65□□□□□ -1.67
VPS13A-206ENST00000376646 C16orf46Q6P387 395 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 DHX32Q7L7V1 743 aaKnown RBP4.65□□□□□ -1.67
VPS13A-206ENST00000376646 FMNL2Q96PY5 1086 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 SERPINA10Q9UK55 444 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 KCNMB2Q9Y691 235 aa4.65□□□□□ -1.67
VPS13A-206ENST00000376646 AFF1P51825 1210 aaKnown RBP4.64□□□□□ -1.67
VPS13A-206ENST00000376646 DOC2BQ14184 412 aa4.64□□□□□ -1.67
VPS13A-206ENST00000376646 ZMYM1Q5SVZ6 1142 aa4.64□□□□□ -1.67
VPS13A-206ENST00000376646 TRAPPC3LQ5T215 181 aa4.64□□□□□ -1.67
VPS13A-206ENST00000376646 SPATA31C1P0DKV0 1188 aa4.63□□□□□ -1.67
VPS13A-206ENST00000376646 PERM1Q5SV97 790 aa4.63□□□□□ -1.67
VPS13A-206ENST00000376646 ALYREFQ86V81 257 aaKnown RBP4.63□□□□□ -1.67
VPS13A-206ENST00000376646 PRDM6Q9NQX0 595 aa4.63□□□□□ -1.67
VPS13A-206ENST00000376646 J3QW42 95 aa4.63□□□□□ -1.67
VPS13A-206ENST00000376646 ATP2B4P23634 1241 aa4.63□□□□□ -1.67
VPS13A-206ENST00000376646 SHISA2Q6UWI4 295 aa4.63□□□□□ -1.67
VPS13A-206ENST00000376646 DMRTC2Q8IXT2 367 aaPredicted RBP4.63□□□□□ -1.67
VPS13A-206ENST00000376646 CLP1Q92989 425 aaKnown RBP4.63□□□□□ -1.67
VPS13A-206ENST00000376646 NSUN5Q96P11 429 aaKnown RBP4.63□□□□□ -1.67
VPS13A-206ENST00000376646 LPIN3Q9BQK8 851 aa4.63□□□□□ -1.67
VPS13A-206ENST00000376646 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.63□□□□□ -1.671e-6■■■■■ 101.9
VPS13A-206ENST00000376646 MMP20O60882 483 aa4.62□□□□□ -1.67
VPS13A-206ENST00000376646 RGS9O75916 674 aaPredicted RBP4.62□□□□□ -1.67
VPS13A-206ENST00000376646 TRIM28Q13263 835 aaKnown RBP4.62□□□□□ -1.67
VPS13A-206ENST00000376646 PRRT3Q5FWE3 981 aa4.62□□□□□ -1.67
VPS13A-206ENST00000376646 C14orf37Q86TY3 774 aa4.62□□□□□ -1.67
VPS13A-206ENST00000376646 ATCAYQ86WG3 371 aa4.62□□□□□ -1.67
VPS13A-206ENST00000376646 MAP3K6O95382 1288 aa4.62□□□□□ -1.67
VPS13A-206ENST00000376646 GPR152Q8TDT2 470 aa4.62□□□□□ -1.67
VPS13A-206ENST00000376646 ZFP64Q9NPA5 681 aa4.62□□□□□ -1.67
VPS13A-206ENST00000376646 A0A0A0MRY4 1105 aa4.61□□□□□ -1.67
VPS13A-206ENST00000376646 EIF2AK2P19525 551 aaKnown RBP4.61□□□□□ -1.67
VPS13A-206ENST00000376646 BRD2P25440 801 aaKnown RBP4.61□□□□□ -1.67
VPS13A-206ENST00000376646 ZAP70P43403 619 aa4.61□□□□□ -1.67
VPS13A-206ENST00000376646 GRIK5Q16478 980 aa4.61□□□□□ -1.67
VPS13A-206ENST00000376646 TRPM4Q8TD43 1214 aa4.61□□□□□ -1.67
VPS13A-206ENST00000376646 SMG9Q9H0W8 520 aaKnown RBP4.61□□□□□ -1.67
VPS13A-206ENST00000376646 SELPP16109 830 aa4.61□□□□□ -1.67
VPS13A-206ENST00000376646 MTMR3Q13615 1198 aa4.61□□□□□ -1.67
VPS13A-206ENST00000376646 ELMSAN1Q6PJG2 1045 aa4.61□□□□□ -1.67
VPS13A-206ENST00000376646 TMEM88BA6NKF7 163 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 SPDYE3A6NKU9 549 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 UBAP1LF5GYI3 381 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 GATA4P43694 442 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms