RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 RPS6KB1P23443 525 aa16.15■□□□□ 0.18
USP49-201ENST00000373006 FILIP1Q7Z7B0 1213 aa16.15■□□□□ 0.18
USP49-201ENST00000373006 ZNF589Q86UQ0 364 aaPredicted RBP16.15■□□□□ 0.18
USP49-201ENST00000373006 PPFIA3O75145 1194 aa16.15■□□□□ 0.18
USP49-201ENST00000373006 PAXBP1Q9Y5B6 917 aa16.15■□□□□ 0.18
USP49-201ENST00000373006 GOLGA6L19H0YKK7 550 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 C11orf57Q6ZUT1 292 aaPredicted RBP16.14■□□□□ 0.17
USP49-201ENST00000373006 KLHDC4Q8TBB5 520 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 USP16Q9Y5T5 823 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 ADCY9O60503 1353 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 TNRQ92752 1358 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 SASH1O94885 1247 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 PROSER3Q2NL68 480 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 LRRC8AQ8IWT6 810 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 ERCC4Q92889 916 aaPredicted RBP16.14■□□□□ 0.17
USP49-201ENST00000373006 BRF1Q92994 677 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 FTOQ9C0B1 505 aaKnown RBP eCLIP16.14■□□□□ 0.17
USP49-201ENST00000373006 TMEM2Q9UHN6 1383 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.14■□□□□ 0.17
USP49-201ENST00000373006 RNF20Q5VTR2 975 aa16.14■□□□□ 0.17
USP49-201ENST00000373006 RBM43Q6ZSC3 357 aaKnown RBP16.14■□□□□ 0.17
USP49-201ENST00000373006 H3BQV1 296 aa16.13■□□□□ 0.17
USP49-201ENST00000373006 CHGBP05060 677 aa16.13■□□□□ 0.17
USP49-201ENST00000373006 ANKRD1Q15327 319 aa16.13■□□□□ 0.17
USP49-201ENST00000373006 IFFO2Q5TF58 517 aa16.13■□□□□ 0.17
USP49-201ENST00000373006 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.13■□□□□ 0.17
USP49-201ENST00000373006 ZFP91Q96JP5 570 aaPredicted RBP16.13■□□□□ 0.17
USP49-201ENST00000373006 LRRC2Q9BYS8 371 aa16.13■□□□□ 0.17
USP49-201ENST00000373006 EID1Q9Y6B2 187 aa16.13■□□□□ 0.17
USP49-201ENST00000373006 NDUFB9Q9Y6M9 179 aa16.13■□□□□ 0.17
USP49-201ENST00000373006 ZNF215Q9UL58 517 aaPredicted RBP16.13■□□□□ 0.17
USP49-201ENST00000373006 HSP90B1P14625 803 aaKnown RBP16.12■□□□□ 0.17
USP49-201ENST00000373006 G3BP1Q13283 466 aaKnown RBP eCLIP16.12■□□□□ 0.17
USP49-201ENST00000373006 MPRIPQ6WCQ1 1025 aa16.12■□□□□ 0.17
USP49-201ENST00000373006 DDX41Q9UJV9 622 aaKnown RBP16.12■□□□□ 0.17
USP49-201ENST00000373006 PRAMEF22A3QJZ6 481 aa16.12■□□□□ 0.17
USP49-201ENST00000373006 SKILP12757 684 aa16.12■□□□□ 0.17
USP49-201ENST00000373006 BABAM1Q9NWV8 329 aa16.12■□□□□ 0.17
USP49-201ENST00000373006 BTBD11A6QL63 1104 aa16.12■□□□□ 0.17
USP49-201ENST00000373006 AIMP1Q12904 312 aaKnown RBP16.12■□□□□ 0.17
USP49-201ENST00000373006 MTX1Q13505 466 aa16.12■□□□□ 0.17
USP49-201ENST00000373006 IQCB1Q15051 598 aa16.11■□□□□ 0.17
USP49-201ENST00000373006 PTPN14Q15678 1187 aa16.11■□□□□ 0.17
USP49-201ENST00000373006 ERC1Q8IUD2 1116 aa16.11■□□□□ 0.17
USP49-201ENST00000373006 TEFQ10587 303 aa16.11■□□□□ 0.17
USP49-201ENST00000373006 KIF18AQ8NI77 898 aa16.11■□□□□ 0.17
USP49-201ENST00000373006 SYTL4Q96C24 671 aaPredicted RBP16.11■□□□□ 0.17
USP49-201ENST00000373006 SUCLG2Q96I99 432 aa16.11■□□□□ 0.17
USP49-201ENST00000373006 SETD1BQ9UPS6 1966 aaKnown RBP16.11■□□□□ 0.17
USP49-201ENST00000373006 NALCNQ8IZF0 1738 aa16.11■□□□□ 0.17
USP49-201ENST00000373006 BECN2A8MW95 431 aa16.1■□□□□ 0.17
USP49-201ENST00000373006 BICC1Q9H694 974 aaKnown RBP16.1■□□□□ 0.17
USP49-201ENST00000373006 NPHP4O75161 1426 aaPredicted RBP16.1■□□□□ 0.17
USP49-201ENST00000373006 RESTQ13127 1097 aa16.1■□□□□ 0.17
USP49-201ENST00000373006 SYCP1Q15431 976 aa16.1■□□□□ 0.17
USP49-201ENST00000373006 KMT5BQ4FZB7 885 aa16.1■□□□□ 0.17
USP49-201ENST00000373006 LMOD2Q6P5Q4 547 aa16.1■□□□□ 0.17
USP49-201ENST00000373006 ADAMTS13Q76LX8 1427 aa16.1■□□□□ 0.17
USP49-201ENST00000373006 HIP1O00291 1037 aa16.1■□□□□ 0.17
USP49-201ENST00000373006 Q6ZUG5 572 aa16.09■□□□□ 0.17
USP49-201ENST00000373006 KAZALD1Q96I82 304 aa16.09■□□□□ 0.17
USP49-201ENST00000373006 DBF4Q9UBU7 674 aaPredicted RBP16.09■□□□□ 0.17
USP49-201ENST00000373006 CCDC69A6NI79 296 aa16.09■□□□□ 0.17
USP49-201ENST00000373006 NBPF6Q5VWK0 638 aa16.09■□□□□ 0.17
USP49-201ENST00000373006 CCDC129Q6ZRS4 1044 aa16.09■□□□□ 0.17
USP49-201ENST00000373006 CCAR1Q8IX12 1150 aaKnown RBP16.09■□□□□ 0.17
USP49-201ENST00000373006 NBPF4Q96M43 638 aa16.09■□□□□ 0.17
USP49-201ENST00000373006 GTF3C6Q969F1 213 aa16.08■□□□□ 0.17
USP49-201ENST00000373006 TAF5LO75529 589 aa16.08■□□□□ 0.16
USP49-201ENST00000373006 ELF2Q15723 593 aa16.08■□□□□ 0.16
USP49-201ENST00000373006 SEC62Q99442 399 aaKnown RBP16.08■□□□□ 0.16
USP49-201ENST00000373006 GOLPH3LQ9H4A5 285 aa16.08■□□□□ 0.16
USP49-201ENST00000373006 FMN2Q9NZ56 1722 aa16.08■□□□□ 0.16
USP49-201ENST00000373006 CACNA1FO60840 1977 aa16.08■□□□□ 0.16
USP49-201ENST00000373006 SLFN14P0C7P3 912 aa16.08■□□□□ 0.16
USP49-201ENST00000373006 NEK1Q96PY6 1258 aa16.08■□□□□ 0.16
USP49-201ENST00000373006 CCDC9Q9Y3X0 531 aaKnown RBP16.08■□□□□ 0.16
USP49-201ENST00000373006 MORC2Q9Y6X9 1032 aaPredicted RBP16.08■□□□□ 0.16
USP49-201ENST00000373006 KSR2Q6VAB6 950 aa16.07■□□□□ 0.16
USP49-201ENST00000373006 CFAP45Q9UL16 551 aa16.07■□□□□ 0.16
USP49-201ENST00000373006 LRRC37A3O60309 1634 aa16.07■□□□□ 0.16
USP49-201ENST00000373006 LRRC59Q96AG4 307 aaKnown RBP16.07■□□□□ 0.16
USP49-201ENST00000373006 GUCY1B3Q02153 619 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 FBXO38Q6PIJ6 1188 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 IPO4Q8TEX9 1081 aaKnown RBP16.06■□□□□ 0.16
USP49-201ENST00000373006 CEMIPQ8WUJ3 1361 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 GRM8O00222 908 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 CDC25BP30305 580 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 SCRN1Q12765 414 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 MRFAP1L1Q96HT8 127 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 ST7Q9NRC1 585 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 PTPRUQ92729 1446 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 ALDH1L1O75891 902 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 RBM6P78332 1123 aaKnown RBP16.06■□□□□ 0.16
USP49-201ENST00000373006 IRX5P78411 483 aaPredicted RBP16.06■□□□□ 0.16
USP49-201ENST00000373006 CCZ1BP86790 482 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 CCZ1P86791 482 aaPredicted RBP16.06■□□□□ 0.16
USP49-201ENST00000373006 STX1AQ16623 288 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 NYAP1Q6ZVC0 841 aa16.06■□□□□ 0.16
USP49-201ENST00000373006 ZNF530Q6P9A1 599 aaPredicted RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms