RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 RGPD2P0DJD1 1756 aa19.4■□□□□ 0.7
SDC4-201ENST00000372733 ADGRL3Q9HAR2 1447 aa19.4■□□□□ 0.7
SDC4-201ENST00000372733 ZNF75DP51815 510 aa19.4■□□□□ 0.7
SDC4-201ENST00000372733 PGBD1Q96JS3 809 aa19.4■□□□□ 0.7
SDC4-201ENST00000372733 C16orf45Q96MC5 204 aaPredicted RBP19.4■□□□□ 0.7
SDC4-201ENST00000372733 NFAT5O94916 1531 aa19.39■□□□□ 0.7
SDC4-201ENST00000372733 DMTNQ08495 405 aa19.39■□□□□ 0.7
SDC4-201ENST00000372733 AIMP1Q12904 312 aaKnown RBP19.39■□□□□ 0.7
SDC4-201ENST00000372733 DNAJC25Q9H1X3 360 aa19.39■□□□□ 0.7
SDC4-201ENST00000372733 SPDYE4A6NLX3 237 aa19.39■□□□□ 0.69
SDC4-201ENST00000372733 RNMTO43148 476 aaKnown RBP19.39■□□□□ 0.69
SDC4-201ENST00000372733 RBM43Q6ZSC3 357 aaKnown RBP19.39■□□□□ 0.69
SDC4-201ENST00000372733 ANKRD7Q92527 254 aa19.39■□□□□ 0.69
SDC4-201ENST00000372733 PLA2G4DQ86XP0 818 aa19.38■□□□□ 0.69
SDC4-201ENST00000372733 LINS1Q8NG48 757 aa19.38■□□□□ 0.69
SDC4-201ENST00000372733 CTIFO43310 598 aaKnown RBP19.38■□□□□ 0.69
SDC4-201ENST00000372733 TDRD7Q8NHU6 1098 aaKnown RBP19.38■□□□□ 0.69
SDC4-201ENST00000372733 PDIA4P13667 645 aaKnown RBP19.38■□□□□ 0.69
SDC4-201ENST00000372733 ZSCAN25Q6NSZ9 544 aa19.38■□□□□ 0.69
SDC4-201ENST00000372733 DDX11Q96FC9 970 aa19.38■□□□□ 0.69
SDC4-201ENST00000372733 JCADQ9P266 1359 aa19.37■□□□□ 0.69
SDC4-201ENST00000372733 U2AF2P26368 475 aaKnown RBP eCLIP19.37■□□□□ 0.69
SDC4-201ENST00000372733 ZNF165P49910 485 aa19.37■□□□□ 0.69
SDC4-201ENST00000372733 PLEKHO1Q53GL0 409 aaPredicted RBP19.37■□□□□ 0.69
SDC4-201ENST00000372733 BRF1Q92994 677 aa19.37■□□□□ 0.69
SDC4-201ENST00000372733 HDAC5Q9UQL6 1122 aa19.37■□□□□ 0.69
SDC4-201ENST00000372733 COL15A1P39059 1388 aa19.37■□□□□ 0.69
SDC4-201ENST00000372733 PHF8Q9UPP1 1060 aa19.37■□□□□ 0.69
SDC4-201ENST00000372733 TAF5LO75529 589 aa19.36■□□□□ 0.69
SDC4-201ENST00000372733 RESTQ13127 1097 aa19.36■□□□□ 0.69
SDC4-201ENST00000372733 GTF3C6Q969F1 213 aa19.36■□□□□ 0.69
SDC4-201ENST00000372733 ALDH8A1Q9H2A2 487 aaPredicted RBP19.36■□□□□ 0.69
SDC4-201ENST00000372733 CHGBP05060 677 aa19.36■□□□□ 0.69
SDC4-201ENST00000372733 C1orf141Q5JVX7 400 aa19.36■□□□□ 0.69
SDC4-201ENST00000372733 HMG20BQ9P0W2 317 aa19.36■□□□□ 0.69
SDC4-201ENST00000372733 NDUFB9Q9Y6M9 179 aa19.36■□□□□ 0.69
SDC4-201ENST00000372733 CCDC144BQ3MJ40 725 aa19.35■□□□□ 0.69
SDC4-201ENST00000372733 CCDC144CPQ8IYA2 1237 aa19.35■□□□□ 0.69
SDC4-201ENST00000372733 UTYO14607 1347 aa19.35■□□□□ 0.69
SDC4-201ENST00000372733 IGKV5-2P06315 115 aa19.35■□□□□ 0.69
SDC4-201ENST00000372733 NCBP1Q09161 790 aaKnown RBP19.35■□□□□ 0.69
SDC4-201ENST00000372733 CLIP2Q9UDT6 1046 aa19.35■□□□□ 0.69
SDC4-201ENST00000372733 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.34■□□□□ 0.69
SDC4-201ENST00000372733 UTP14CQ5TAP6 766 aaKnown RBP19.34■□□□□ 0.69
SDC4-201ENST00000372733 CACTINQ8WUQ7 758 aaKnown RBP19.34■□□□□ 0.69
SDC4-201ENST00000372733 HEG1Q9ULI3 1381 aa19.34■□□□□ 0.69
SDC4-201ENST00000372733 HSP90B1P14625 803 aaKnown RBP19.34■□□□□ 0.69
SDC4-201ENST00000372733 FOSBP53539 338 aa19.34■□□□□ 0.69
SDC4-201ENST00000372733 CEBPZQ03701 1054 aaKnown RBP19.34■□□□□ 0.69
SDC4-201ENST00000372733 EPHA10Q5JZY3 1008 aa19.34■□□□□ 0.69
SDC4-201ENST00000372733 CCDC129Q6ZRS4 1044 aa19.34■□□□□ 0.69
SDC4-201ENST00000372733 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.34■□□□□ 0.69
SDC4-201ENST00000372733 TNNT1P13805 278 aa19.33■□□□□ 0.69
SDC4-201ENST00000372733 RBM33Q96EV2 1170 aaKnown RBP19.33■□□□□ 0.69
SDC4-201ENST00000372733 TSGA10IPQ3SY00 556 aa19.33■□□□□ 0.68
SDC4-201ENST00000372733 LRRC2Q9BYS8 371 aa19.33■□□□□ 0.68
SDC4-201ENST00000372733 H3BQV1 296 aa19.32■□□□□ 0.68
SDC4-201ENST00000372733 DDX58O95786 925 aaKnown RBP19.32■□□□□ 0.68
SDC4-201ENST00000372733 IFFO2Q5TF58 517 aa19.32■□□□□ 0.68
SDC4-201ENST00000372733 Q6ZUG5 572 aa19.32■□□□□ 0.68
SDC4-201ENST00000372733 NCAPD2Q15021 1401 aa19.32■□□□□ 0.68
SDC4-201ENST00000372733 SMTNL1A8MU46 457 aa19.32■□□□□ 0.68
SDC4-201ENST00000372733 C11orf57Q6ZUT1 292 aaPredicted RBP19.32■□□□□ 0.68
SDC4-201ENST00000372733 NEK1Q96PY6 1258 aa19.32■□□□□ 0.68
SDC4-201ENST00000372733 FTOQ9C0B1 505 aaKnown RBP eCLIP19.32■□□□□ 0.68
SDC4-201ENST00000372733 AMOTQ4VCS5 1084 aa19.31■□□□□ 0.68
SDC4-201ENST00000372733 USPL1Q5W0Q7 1092 aa19.31■□□□□ 0.68
SDC4-201ENST00000372733 RIC3Q7Z5B4 369 aa19.31■□□□□ 0.68
SDC4-201ENST00000372733 SEC62Q99442 399 aaKnown RBP19.31■□□□□ 0.68
SDC4-201ENST00000372733 DDX21Q9NR30 783 aaKnown RBP eCLIP19.31■□□□□ 0.68
SDC4-201ENST00000372733 DBNLQ9UJU6 430 aaKnown RBP19.31■□□□□ 0.68
SDC4-201ENST00000372733 KIF13AQ9H1H9 1805 aa19.31■□□□□ 0.68
SDC4-201ENST00000372733 MRC1P22897 1456 aa19.31■□□□□ 0.68
SDC4-201ENST00000372733 ZNF609O15014 1411 aa19.31■□□□□ 0.68
SDC4-201ENST00000372733 NAA30Q147X3 362 aaPredicted RBP19.31■□□□□ 0.68
SDC4-201ENST00000372733 PDIA6Q15084 440 aa19.31■□□□□ 0.68
SDC4-201ENST00000372733 KRT32Q14532 448 aa19.3■□□□□ 0.68
SDC4-201ENST00000372733 ARID5BQ14865 1188 aa19.3■□□□□ 0.68
SDC4-201ENST00000372733 A0A087WWV3 80 aa19.3■□□□□ 0.68
SDC4-201ENST00000372733 TPD52L1Q16890 204 aaPredicted RBP19.3■□□□□ 0.68
SDC4-201ENST00000372733 MYL6BP14649 208 aa19.29■□□□□ 0.68
SDC4-201ENST00000372733 IQCB1Q15051 598 aa19.29■□□□□ 0.68
SDC4-201ENST00000372733 DNAJC2Q99543 621 aaKnown RBP19.29■□□□□ 0.68
SDC4-201ENST00000372733 BCL11BQ9C0K0 894 aaPredicted RBP19.29■□□□□ 0.68
SDC4-201ENST00000372733 NEURL1BA8MQ27 555 aa19.29■□□□□ 0.68
SDC4-201ENST00000372733 SCRN1Q12765 414 aa19.29■□□□□ 0.68
SDC4-201ENST00000372733 CYP21A2P08686 494 aa19.28■□□□□ 0.68
SDC4-201ENST00000372733 THEMISQ8N1K5 641 aaPredicted RBP19.28■□□□□ 0.68
SDC4-201ENST00000372733 OVOS2A0A0G2JMS6 1433 aa19.28■□□□□ 0.68
SDC4-201ENST00000372733 GOLGA6L19H0YKK7 550 aa19.28■□□□□ 0.68
SDC4-201ENST00000372733 MYD88Q99836 296 aa19.28■□□□□ 0.68
SDC4-201ENST00000372733 GOLPH3LQ9H4A5 285 aa19.28■□□□□ 0.68
SDC4-201ENST00000372733 USP27XA6NNY8 438 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 CDC25BP30305 580 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 TFCP2Q12800 502 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 SLC39A6Q13433 755 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 GCKRQ14397 625 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 CCDC112Q8NEF3 446 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 ZNF592Q92610 1267 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 ATP5JP18859 108 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms