RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CCT2P78371 535 aaKnown RBP14.38□□□□□ -0.11
CLIP3-201ENST00000360535 AMOTQ4VCS5 1084 aa14.38□□□□□ -0.11
CLIP3-201ENST00000360535 CHST3Q7LGC8 479 aa14.38□□□□□ -0.11
CLIP3-201ENST00000360535 CCDC186Q7Z3E2 898 aa14.38□□□□□ -0.11
CLIP3-201ENST00000360535 MYRIPQ8NFW9 859 aa14.38□□□□□ -0.11
CLIP3-201ENST00000360535 FUCA2Q9BTY2 467 aa14.38□□□□□ -0.11
CLIP3-201ENST00000360535 DNAJC25Q9H1X3 360 aa14.38□□□□□ -0.11
CLIP3-201ENST00000360535 NR1I2O75469 434 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 MTX1Q13505 466 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 TOB2Q14106 344 aaPredicted RBP14.37□□□□□ -0.11
CLIP3-201ENST00000360535 Q6ZUG5 572 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 ERCC4Q92889 916 aaPredicted RBP14.37□□□□□ -0.11
CLIP3-201ENST00000360535 BRF1Q92994 677 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 FTOQ9C0B1 505 aaKnown RBP eCLIP14.37□□□□□ -0.11
CLIP3-201ENST00000360535 HDAC5Q9UQL6 1122 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 HIP1O00291 1037 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 PDCP20941 246 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 CBX1P83916 185 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 DDX21Q9NR30 783 aaKnown RBP eCLIP14.37□□□□□ -0.11
CLIP3-201ENST00000360535 MRVI1Q9Y6F6 885 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 PXDNQ92626 1479 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 C16orf45Q96MC5 204 aaPredicted RBP14.37□□□□□ -0.11
CLIP3-201ENST00000360535 DBNDD2Q9BQY9 259 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 USP16Q9Y5T5 823 aa14.37□□□□□ -0.11
CLIP3-201ENST00000360535 GOLGA6L6A8MZA4 724 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 CHAF1AQ13111 956 aaPredicted RBP14.36□□□□□ -0.11
CLIP3-201ENST00000360535 FAM200AQ8TCP9 573 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 RAPGEF4Q8WZA2 1011 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 DDX17Q92841 729 aaKnown RBP14.36□□□□□ -0.11
CLIP3-201ENST00000360535 MAP7D2Q96T17 732 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 ZNF330Q9Y3S2 320 aaPredicted RBP14.36□□□□□ -0.11
CLIP3-201ENST00000360535 USP42Q9H9J4 1324 aaKnown RBP14.36□□□□□ -0.11
CLIP3-201ENST00000360535 LEO1Q8WVC0 666 aaPredicted RBP14.36□□□□□ -0.11
CLIP3-201ENST00000360535 ZNF592Q92610 1267 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 CBX8Q9HC52 389 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 DBNLQ9UJU6 430 aaKnown RBP14.36□□□□□ -0.11
CLIP3-201ENST00000360535 KIF3AQ9Y496 699 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 NEK1Q96PY6 1258 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 RGPD2P0DJD1 1756 aa14.36□□□□□ -0.11
CLIP3-201ENST00000360535 SPDYE4A6NLX3 237 aa14.35□□□□□ -0.11
CLIP3-201ENST00000360535 NEURL1BA8MQ27 555 aa14.35□□□□□ -0.11
CLIP3-201ENST00000360535 TAF5LO75529 589 aa14.35□□□□□ -0.11
CLIP3-201ENST00000360535 GCKRQ14397 625 aa14.35□□□□□ -0.11
CLIP3-201ENST00000360535 ANKRD1Q15327 319 aa14.35□□□□□ -0.11
CLIP3-201ENST00000360535 ZNF790Q6PG37 636 aa14.35□□□□□ -0.11
CLIP3-201ENST00000360535 ZNF496Q96IT1 587 aaPredicted RBP14.35□□□□□ -0.11
CLIP3-201ENST00000360535 A0A087WZG4 1122 aa14.34□□□□□ -0.11
CLIP3-201ENST00000360535 RIOK3O14730 519 aaKnown RBP14.34□□□□□ -0.11
CLIP3-201ENST00000360535 ZNF165P49910 485 aa14.34□□□□□ -0.11
CLIP3-201ENST00000360535 ANKRD13DQ6ZTN6 518 aa14.34□□□□□ -0.11
CLIP3-201ENST00000360535 RAB11FIP4Q86YS3 637 aa14.34□□□□□ -0.11
CLIP3-201ENST00000360535 SCAND2PQ9GZW5 306 aaPredicted RBP14.34□□□□□ -0.11
CLIP3-201ENST00000360535 NCOA5Q9HCD5 579 aaKnown RBP14.34□□□□□ -0.11
CLIP3-201ENST00000360535 LRRC37A3O60309 1634 aa14.34□□□□□ -0.11
CLIP3-201ENST00000360535 HMGN5P82970 282 aaKnown RBP14.34□□□□□ -0.11
CLIP3-201ENST00000360535 PDIA6Q15084 440 aa14.34□□□□□ -0.11
CLIP3-201ENST00000360535 TTC5Q8N0Z6 440 aa14.34□□□□□ -0.11
CLIP3-201ENST00000360535 CABLES1Q8TDN4 633 aa14.34□□□□□ -0.11
CLIP3-201ENST00000360535 CCDC85AQ96PX6 553 aaPredicted RBP14.34□□□□□ -0.11
CLIP3-201ENST00000360535 A0A0G2JLW4 131 aa14.33□□□□□ -0.11
CLIP3-201ENST00000360535 GOLIM4O00461 696 aa14.33□□□□□ -0.11
CLIP3-201ENST00000360535 ARHGEF25Q86VW2 580 aa14.33□□□□□ -0.11
CLIP3-201ENST00000360535 KIAA1524Q8TCG1 905 aa14.33□□□□□ -0.11
CLIP3-201ENST00000360535 PGBD1Q96JS3 809 aa14.33□□□□□ -0.11
CLIP3-201ENST00000360535 LTN1O94822 1766 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 TIMM10P62072 90 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 APOBRQ0VD83 1088 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 CHRNA2Q15822 529 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 TNNI3KQ59H18 835 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 PPP4R3BQ5MIZ7 849 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 ZNF710Q8N1W2 664 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 PRIMPOLQ96LW4 560 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 BCL2L12Q9HB09 334 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 FPGT-TNNI3KV9GXZ4 949 aa14.33□□□□□ -0.12
CLIP3-201ENST00000360535 CYP21A2P08686 494 aa14.32□□□□□ -0.12
CLIP3-201ENST00000360535 ANKLE2Q86XL3 938 aa14.32□□□□□ -0.12
CLIP3-201ENST00000360535 LMBR1LQ6UX01 489 aa14.32□□□□□ -0.12
CLIP3-201ENST00000360535 A0A0U1RQG5 324 aaPredicted RBP14.31□□□□□ -0.12
CLIP3-201ENST00000360535 GOLGA6L19H0YKK7 550 aa14.31□□□□□ -0.12
CLIP3-201ENST00000360535 KCNB2Q92953 911 aa14.31□□□□□ -0.12
CLIP3-201ENST00000360535 NPHP3Q7Z494 1330 aa14.31□□□□□ -0.12
CLIP3-201ENST00000360535 KRT28Q7Z3Y7 464 aa14.31□□□□□ -0.12
CLIP3-201ENST00000360535 FILIP1Q7Z7B0 1213 aa14.31□□□□□ -0.12
CLIP3-201ENST00000360535 CLIP2Q9UDT6 1046 aa14.31□□□□□ -0.12
CLIP3-201ENST00000360535 ANKARQ7Z5J8 1434 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 SCRN1Q12765 414 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 ARID5BQ14865 1188 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 METTL22Q9BUU2 404 aaPredicted RBP14.3□□□□□ -0.12
CLIP3-201ENST00000360535 SNRKQ9NRH2 765 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 PODXL2Q9NZ53 605 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 COL15A1P39059 1388 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 PTPN12Q05209 780 aaKnown RBP14.3□□□□□ -0.12
CLIP3-201ENST00000360535 HSP90AB3PQ58FF7 597 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 OTUD7BQ6GQQ9 843 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 GTF3C6Q969F1 213 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 ZNF594Q96JF6 807 aaPredicted RBP14.3□□□□□ -0.12
CLIP3-201ENST00000360535 ZHX1Q9UKY1 873 aaPredicted RBP14.3□□□□□ -0.12
CLIP3-201ENST00000360535 BECN2A8MW95 431 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 IGSF3O75054 1194 aa14.3□□□□□ -0.12
CLIP3-201ENST00000360535 HAND2P61296 217 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms