RNA–Protein interactions for RNA: ENST00000354537.1

CAPN9-202, Transcript of calpain 9, humanhuman

TSL 1 (best) BASIC

Gene CAPN9, Length 2,484 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN9-202ENST00000354537 PRDM10Q9NQV6 1147 aa13.47□□□□□ -0.25
CAPN9-202ENST00000354537 PHRF1Q9P1Y6 1649 aaKnown RBP13.47□□□□□ -0.25
CAPN9-202ENST00000354537 GRM8O00222 908 aa13.47□□□□□ -0.25
CAPN9-202ENST00000354537 TRHP20396 242 aaPredicted RBP13.47□□□□□ -0.25
CAPN9-202ENST00000354537 FERMT3Q86UX7 667 aa13.47□□□□□ -0.25
CAPN9-202ENST00000354537 GTF3C6Q969F1 213 aa13.47□□□□□ -0.25
CAPN9-202ENST00000354537 DDX58O95786 925 aaKnown RBP13.46□□□□□ -0.25
CAPN9-202ENST00000354537 CKAP2LQ8IYA6 745 aa13.46□□□□□ -0.25
CAPN9-202ENST00000354537 ABTB2Q8N961 1025 aa13.46□□□□□ -0.25
CAPN9-202ENST00000354537 CCDC112Q8NEF3 446 aa13.46□□□□□ -0.25
CAPN9-202ENST00000354537 PGBD1Q96JS3 809 aa13.46□□□□□ -0.25
CAPN9-202ENST00000354537 SLC26A8Q96RN1 970 aa13.46□□□□□ -0.25
CAPN9-202ENST00000354537 CLIP2Q9UDT6 1046 aa13.46□□□□□ -0.25
CAPN9-202ENST00000354537 GABPB1Q06547 395 aaPredicted RBP13.46□□□□□ -0.26
CAPN9-202ENST00000354537 CHMP4CQ96CF2 233 aa13.46□□□□□ -0.26
CAPN9-202ENST00000354537 FSD1Q9BTV5 496 aa13.46□□□□□ -0.26
CAPN9-202ENST00000354537 A0A0D9SFI3 127 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 TAF5LO75529 589 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 IQCB1Q15051 598 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 NAA16Q6N069 864 aaPredicted RBP13.45□□□□□ -0.26
CAPN9-202ENST00000354537 BICD2Q8TD16 824 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 CTNNA3Q9UI47 895 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 RCOR1Q9UKL0 485 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 PA2G4Q9UQ80 394 aaKnown RBP13.45□□□□□ -0.26
CAPN9-202ENST00000354537 U3KPZ7 1027 aaPredicted RBP13.45□□□□□ -0.26
CAPN9-202ENST00000354537 GOLGA6L19H0YKK7 550 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 NR1I2O75469 434 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 DHX8Q14562 1220 aaKnown RBP13.45□□□□□ -0.26
CAPN9-202ENST00000354537 SMARCC2Q8TAQ2 1214 aa13.45□□□□□ -0.26
CAPN9-202ENST00000354537 CACTINQ8WUQ7 758 aaKnown RBP13.45□□□□□ -0.26
CAPN9-202ENST00000354537 LTV1Q96GA3 475 aaPredicted RBP13.45□□□□□ -0.26
CAPN9-202ENST00000354537 TFIP11Q9UBB9 837 aaKnown RBP13.45□□□□□ -0.26
CAPN9-202ENST00000354537 NFAT5O94916 1531 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 FAM177BA6PVY3 158 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 KIF2AO00139 706 aaPredicted RBP13.44□□□□□ -0.26
CAPN9-202ENST00000354537 LRMPQ12912 555 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 STX1AQ16623 288 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 TPD52L1Q16890 204 aaPredicted RBP13.44□□□□□ -0.26
CAPN9-202ENST00000354537 TAF3Q5VWG9 929 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 FAM173BQ6P4H8 233 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 LRRC8AQ8IWT6 810 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 KAZALD1Q96I82 304 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 SUCLG2Q96I99 432 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 RNMTO43148 476 aaKnown RBP13.44□□□□□ -0.26
CAPN9-202ENST00000354537 KCNQ3O43525 872 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 HMGB1P09429 215 aaKnown RBP13.44□□□□□ -0.26
CAPN9-202ENST00000354537 ATP5JP18859 108 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 U2AF2P26368 475 aaKnown RBP eCLIP13.44□□□□□ -0.26
CAPN9-202ENST00000354537 NBPF6Q5VWK0 638 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 KCNH5Q8NCM2 988 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 NBPF4Q96M43 638 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 NEK1Q96PY6 1258 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 DNAJC25Q9H1X3 360 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 NRBP1Q9UHY1 535 aa13.44□□□□□ -0.26
CAPN9-202ENST00000354537 MORC2Q9Y6X9 1032 aaPredicted RBP13.44□□□□□ -0.26
CAPN9-202ENST00000354537 LTN1O94822 1766 aa13.43□□□□□ -0.26
CAPN9-202ENST00000354537 FAM193AP78312 1265 aa13.43□□□□□ -0.26
CAPN9-202ENST00000354537 CEP135Q66GS9 1140 aa13.43□□□□□ -0.26
CAPN9-202ENST00000354537 C16orf45Q96MC5 204 aaPredicted RBP13.43□□□□□ -0.26
CAPN9-202ENST00000354537 DDX41Q9UJV9 622 aaKnown RBP13.43□□□□□ -0.26
CAPN9-202ENST00000354537 CHMP3Q9Y3E7 222 aa13.43□□□□□ -0.26
CAPN9-202ENST00000354537 NUTM2GQ5VZR2 741 aa13.42□□□□□ -0.26
CAPN9-202ENST00000354537 ZNF530Q6P9A1 599 aaPredicted RBP13.42□□□□□ -0.26
CAPN9-202ENST00000354537 NYAP1Q6ZVC0 841 aa13.42□□□□□ -0.26
CAPN9-202ENST00000354537 BRF1Q92994 677 aa13.42□□□□□ -0.26
CAPN9-202ENST00000354537 CCDC8Q9H0W5 538 aaPredicted RBP13.42□□□□□ -0.26
CAPN9-202ENST00000354537 DDX21Q9NR30 783 aaKnown RBP eCLIP13.42□□□□□ -0.26
CAPN9-202ENST00000354537 H3BQV1 296 aa13.42□□□□□ -0.26
CAPN9-202ENST00000354537 TUBB4AP04350 444 aa13.42□□□□□ -0.26
CAPN9-202ENST00000354537 IFFO2Q5TF58 517 aa13.42□□□□□ -0.26
CAPN9-202ENST00000354537 USHBP1Q8N6Y0 703 aa13.42□□□□□ -0.26
CAPN9-202ENST00000354537 DDX54Q8TDD1 881 aaKnown RBP13.42□□□□□ -0.26
CAPN9-202ENST00000354537 BICC1Q9H694 974 aaKnown RBP13.42□□□□□ -0.26
CAPN9-202ENST00000354537 COL15A1P39059 1388 aa13.42□□□□□ -0.26
CAPN9-202ENST00000354537 PFKFB2O60825 505 aa13.41□□□□□ -0.26
CAPN9-202ENST00000354537 SLFNL1Q499Z3 407 aa13.41□□□□□ -0.26
CAPN9-202ENST00000354537 ZNF396Q96N95 335 aaPredicted RBP13.41□□□□□ -0.26
CAPN9-202ENST00000354537 BOLA2Q9H3K6 86 aa13.41□□□□□ -0.26
CAPN9-202ENST00000354537 ANO10Q9NW15 660 aa13.41□□□□□ -0.26
CAPN9-202ENST00000354537 ADD1P35611 737 aaKnown RBP13.41□□□□□ -0.26
CAPN9-202ENST00000354537 GSDMDP57764 484 aa13.41□□□□□ -0.26
CAPN9-202ENST00000354537 CWF19L2Q2TBE0 894 aaKnown RBP13.41□□□□□ -0.26
CAPN9-202ENST00000354537 CCDC144BQ3MJ40 725 aa13.41□□□□□ -0.26
CAPN9-202ENST00000354537 CCDC144CPQ8IYA2 1237 aa13.41□□□□□ -0.26
CAPN9-202ENST00000354537 COPRSQ9NQ92 184 aa13.41□□□□□ -0.26
CAPN9-202ENST00000354537 ZHX1Q9UKY1 873 aaPredicted RBP13.41□□□□□ -0.26
CAPN9-202ENST00000354537 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
CAPN9-202ENST00000354537 ANXA1P04083 346 aa13.4□□□□□ -0.26
CAPN9-202ENST00000354537 C1orf141Q5JVX7 400 aa13.4□□□□□ -0.26
CAPN9-202ENST00000354537 ZNF397Q8NF99 534 aaPredicted RBP13.4□□□□□ -0.26
CAPN9-202ENST00000354537 IMPACTQ9P2X3 320 aa13.4□□□□□ -0.26
CAPN9-202ENST00000354537 PTPN14Q15678 1187 aa13.4□□□□□ -0.26
CAPN9-202ENST00000354537 ZNF589Q86UQ0 364 aaPredicted RBP13.4□□□□□ -0.26
CAPN9-202ENST00000354537 ERO1AQ96HE7 468 aa13.4□□□□□ -0.26
CAPN9-202ENST00000354537 NAT10Q9H0A0 1025 aaKnown RBP13.4□□□□□ -0.26
CAPN9-202ENST00000354537 ADAMTS7Q9UKP4 1686 aa13.4□□□□□ -0.27
CAPN9-202ENST00000354537 KCNJ6P48051 423 aa13.39□□□□□ -0.27
CAPN9-202ENST00000354537 CCDC73Q6ZRK6 1079 aa13.39□□□□□ -0.27
CAPN9-202ENST00000354537 Q6ZUG5 572 aa13.39□□□□□ -0.27
CAPN9-202ENST00000354537 TLR7Q9NYK1 1049 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms