RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TTLL7Q6ZT98 887 aa26.06■■□□□ 1.76
SHMT1-202ENST00000352886 DBNDD2Q9BQY9 259 aa26.06■■□□□ 1.76
SHMT1-202ENST00000352886 NUP188Q5SRE5 1749 aa26.06■■□□□ 1.76
SHMT1-202ENST00000352886 TPCN1Q9ULQ1 816 aa26.06■■□□□ 1.76
SHMT1-202ENST00000352886 CHMP3Q9Y3E7 222 aa26.06■■□□□ 1.76
SHMT1-202ENST00000352886 COL5A2P05997 1499 aaPredicted RBP26.06■■□□□ 1.76
SHMT1-202ENST00000352886 JCADQ9P266 1359 aa26.05■■□□□ 1.76
SHMT1-202ENST00000352886 ERVV-2B6SEH9 535 aa26.05■■□□□ 1.76
SHMT1-202ENST00000352886 NECAB1Q8N987 351 aa26.05■■□□□ 1.76
SHMT1-202ENST00000352886 H7C1W4 665 aa26.05■■□□□ 1.76
SHMT1-202ENST00000352886 FOXO4P98177 505 aa26.05■■□□□ 1.76
SHMT1-202ENST00000352886 BLOC1S2Q6QNY1 142 aa26.05■■□□□ 1.76
SHMT1-202ENST00000352886 TAF6LQ9Y6J9 622 aa26.05■■□□□ 1.76
SHMT1-202ENST00000352886 A1BGP04217 495 aa26.04■■□□□ 1.76
SHMT1-202ENST00000352886 DNAJC2Q99543 621 aaKnown RBP26.04■■□□□ 1.76
SHMT1-202ENST00000352886 ATP6V1DQ9Y5K8 247 aa26.04■■□□□ 1.76
SHMT1-202ENST00000352886 KCPQ6ZWJ8 1503 aa26.04■■□□□ 1.76
SHMT1-202ENST00000352886 TAF5LO75529 589 aa26.04■■□□□ 1.76
SHMT1-202ENST00000352886 CWC25Q9NXE8 425 aaPredicted RBP26.03■■□□□ 1.76
SHMT1-202ENST00000352886 TCEANC2Q96MN5 208 aa26.03■■□□□ 1.76
SHMT1-202ENST00000352886 MTMR6Q9Y217 621 aa26.03■■□□□ 1.76
SHMT1-202ENST00000352886 TJP1Q07157 1748 aa26.02■■□□□ 1.76
SHMT1-202ENST00000352886 HMG20BQ9P0W2 317 aa26.02■■□□□ 1.76
SHMT1-202ENST00000352886 PAPPAQ13219 1627 aa26.02■■□□□ 1.76
SHMT1-202ENST00000352886 IL2RBP14784 551 aa26.02■■□□□ 1.76
SHMT1-202ENST00000352886 RPS6KB1P23443 525 aa26.01■■□□□ 1.75
SHMT1-202ENST00000352886 SOS2Q07890 1332 aaPredicted RBP26.01■■□□□ 1.75
SHMT1-202ENST00000352886 NKX1-1Q15270 411 aaPredicted RBP26.01■■□□□ 1.75
SHMT1-202ENST00000352886 HAUS7Q99871 368 aa26.01■■□□□ 1.75
SHMT1-202ENST00000352886 SHANK3Q9BYB0 1731 aa26.01■■□□□ 1.75
SHMT1-202ENST00000352886 ZBTB3Q9H5J0 574 aa26.01■■□□□ 1.75
SHMT1-202ENST00000352886 RFX7Q2KHR2 1363 aa26.01■■□□□ 1.75
SHMT1-202ENST00000352886 PHF14O94880 888 aa26■■□□□ 1.75
SHMT1-202ENST00000352886 CHGBP05060 677 aa26■■□□□ 1.75
SHMT1-202ENST00000352886 ANKRD1Q15327 319 aa26■■□□□ 1.75
SHMT1-202ENST00000352886 RNF214Q8ND24 703 aa26■■□□□ 1.75
SHMT1-202ENST00000352886 PDLIM2Q96JY6 352 aa26■■□□□ 1.75
SHMT1-202ENST00000352886 TSPY26PQ9H489 355 aa26■■□□□ 1.75
SHMT1-202ENST00000352886 CCDC9Q9Y3X0 531 aaKnown RBP26■■□□□ 1.75
SHMT1-202ENST00000352886 ZNF609O15014 1411 aa26■■□□□ 1.75
SHMT1-202ENST00000352886 FIBPO43427 364 aa25.99■■□□□ 1.75
SHMT1-202ENST00000352886 TSGA10IPQ3SY00 556 aa25.99■■□□□ 1.75
SHMT1-202ENST00000352886 USPL1Q5W0Q7 1092 aa25.99■■□□□ 1.75
SHMT1-202ENST00000352886 DDX46Q7L014 1031 aaKnown RBP25.99■■□□□ 1.75
SHMT1-202ENST00000352886 CARD10Q9BWT7 1032 aa25.99■■□□□ 1.75
SHMT1-202ENST00000352886 VPS37CA5D8V6 355 aaPredicted RBP25.98■■□□□ 1.75
SHMT1-202ENST00000352886 TPRNQ4KMQ1 711 aa25.98■■□□□ 1.75
SHMT1-202ENST00000352886 ATG9AQ7Z3C6 839 aa25.98■■□□□ 1.75
SHMT1-202ENST00000352886 STRN4Q9NRL3 753 aa25.98■■□□□ 1.75
SHMT1-202ENST00000352886 SLAIN2Q9P270 581 aa25.98■■□□□ 1.75
SHMT1-202ENST00000352886 ABCA3Q99758 1704 aa25.98■■□□□ 1.75
SHMT1-202ENST00000352886 UBE2HP62256 183 aa25.98■■□□□ 1.75
SHMT1-202ENST00000352886 CCDC129Q6ZRS4 1044 aa25.98■■□□□ 1.75
SHMT1-202ENST00000352886 TOB2Q14106 344 aaPredicted RBP25.97■■□□□ 1.75
SHMT1-202ENST00000352886 SEC62Q99442 399 aaKnown RBP25.97■■□□□ 1.75
SHMT1-202ENST00000352886 DNM1Q05193 864 aaKnown RBP25.97■■□□□ 1.75
SHMT1-202ENST00000352886 ZSCAN30Q86W11 494 aa25.97■■□□□ 1.75
SHMT1-202ENST00000352886 NEUROD6Q96NK8 337 aa25.97■■□□□ 1.75
SHMT1-202ENST00000352886 ALDH8A1Q9H2A2 487 aaPredicted RBP25.97■■□□□ 1.75
SHMT1-202ENST00000352886 CCDC191Q8NCU4 936 aa25.96■■□□□ 1.75
SHMT1-202ENST00000352886 MCMDC2Q4G0Z9 681 aa25.96■■□□□ 1.75
SHMT1-202ENST00000352886 KRT32Q14532 448 aa25.95■■□□□ 1.75
SHMT1-202ENST00000352886 LARP1BQ659C4 914 aaKnown RBP25.95■■□□□ 1.75
SHMT1-202ENST00000352886 TNS2Q63HR2 1409 aa25.95■■□□□ 1.74
SHMT1-202ENST00000352886 CCDC183Q5T5S1 534 aa25.95■■□□□ 1.74
SHMT1-202ENST00000352886 KBTBD3Q8NAB2 608 aa25.95■■□□□ 1.74
SHMT1-202ENST00000352886 TIMM10P62072 90 aa25.94■■□□□ 1.74
SHMT1-202ENST00000352886 IL15P40933 162 aaPredicted RBP25.94■■□□□ 1.74
SHMT1-202ENST00000352886 EVA1CP58658 441 aa25.93■■□□□ 1.74
SHMT1-202ENST00000352886 CSPP1Q1MSJ5 1256 aa25.93■■□□□ 1.74
SHMT1-202ENST00000352886 ZNF594Q96JF6 807 aaPredicted RBP25.93■■□□□ 1.74
SHMT1-202ENST00000352886 U3KPZ7 1027 aaPredicted RBP25.93■■□□□ 1.74
SHMT1-202ENST00000352886 LRRC24Q50LG9 513 aa25.93■■□□□ 1.74
SHMT1-202ENST00000352886 HS1BP3Q53T59 392 aa25.93■■□□□ 1.74
SHMT1-202ENST00000352886 GPR108Q9NPR9 543 aa25.93■■□□□ 1.74
SHMT1-202ENST00000352886 GOLIM4O00461 696 aa25.92■■□□□ 1.74
SHMT1-202ENST00000352886 STK3Q13188 491 aa25.92■■□□□ 1.74
SHMT1-202ENST00000352886 NEK1Q96PY6 1258 aa25.92■■□□□ 1.74
SHMT1-202ENST00000352886 TOGARAM1Q9Y4F4 1720 aa25.92■■□□□ 1.74
SHMT1-202ENST00000352886 PAG1Q9NWQ8 432 aa25.92■■□□□ 1.74
SHMT1-202ENST00000352886 EYA2O00167 538 aa25.91■■□□□ 1.74
SHMT1-202ENST00000352886 CYP21A2P08686 494 aa25.91■■□□□ 1.74
SHMT1-202ENST00000352886 CDC37L1Q7L3B6 337 aa25.91■■□□□ 1.74
SHMT1-202ENST00000352886 SH3TC1Q8TE82 1336 aa25.91■■□□□ 1.74
SHMT1-202ENST00000352886 PALLDQ8WX93 1383 aa25.91■■□□□ 1.74
SHMT1-202ENST00000352886 PDCP20941 246 aa25.9■■□□□ 1.74
SHMT1-202ENST00000352886 MSNP26038 577 aaKnown RBP25.9■■□□□ 1.74
SHMT1-202ENST00000352886 NAP1L5Q96NT1 182 aaPredicted RBP25.9■■□□□ 1.74
SHMT1-202ENST00000352886 STRCQ7RTU9 1775 aa25.9■■□□□ 1.74
SHMT1-202ENST00000352886 PDIA4P13667 645 aaKnown RBP25.9■■□□□ 1.74
SHMT1-202ENST00000352886 ZNF330Q9Y3S2 320 aaPredicted RBP25.9■■□□□ 1.74
SHMT1-202ENST00000352886 ZNF335Q9H4Z2 1342 aaPredicted RBP25.89■■□□□ 1.74
SHMT1-202ENST00000352886 FERMT3Q86UX7 667 aa25.89■■□□□ 1.73
SHMT1-202ENST00000352886 TMOD3Q9NYL9 352 aa25.89■■□□□ 1.73
SHMT1-202ENST00000352886 SLFNL1Q499Z3 407 aa25.88■■□□□ 1.73
SHMT1-202ENST00000352886 LETM1O95202 739 aaPredicted RBP25.88■■□□□ 1.73
SHMT1-202ENST00000352886 ATG3Q9NT62 314 aa25.88■■□□□ 1.73
SHMT1-202ENST00000352886 A0A1B0GUL7 405 aa25.87■■□□□ 1.73
SHMT1-202ENST00000352886 ISCA1Q9BUE6 129 aa25.87■■□□□ 1.73
SHMT1-202ENST00000352886 PUS3Q9BZE2 481 aaKnown RBP25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms