RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 KDM5AP29375 1690 aaKnown RBP8.09□□□□□ -1.11
SF3B1-201ENST00000335508 OVOS2A0A0J9YW53 1432 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 OVOS2Q6IE36 1432 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 KINO60870 393 aaKnown RBP8.09□□□□□ -1.11
SF3B1-201ENST00000335508 TXLNAP40222 546 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 QTRT2Q9H974 415 aaKnown RBP8.09□□□□□ -1.11
SF3B1-201ENST00000335508 FOXD4L1Q9NU39 408 aa8.09□□□□□ -1.11
SF3B1-201ENST00000335508 ZSCAN29Q8IWY8 852 aaPredicted RBP8.09□□□□□ -1.12
SF3B1-201ENST00000335508 SNRKQ9NRH2 765 aa8.09□□□□□ -1.12
SF3B1-201ENST00000335508 ABCA6Q8N139 1617 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 NEURL1BA8MQ27 555 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 SMARCA5O60264 1052 aaPredicted RBP8.08□□□□□ -1.12
SF3B1-201ENST00000335508 STK38Q15208 465 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 SOGA3Q5TF21 947 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 PRPF40BQ6NWY9 871 aaKnown RBP8.08□□□□□ -1.12
SF3B1-201ENST00000335508 LPIN2Q92539 896 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 MKNK2Q9HBH9 465 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 PDE6BP35913 854 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 JDP2Q8WYK2 163 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 NOL7Q9UMY1 257 aaKnown RBP8.08□□□□□ -1.12
SF3B1-201ENST00000335508 LAMC1P11047 1609 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 HEG1Q9ULI3 1381 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 PIP4K2AP48426 406 aaPredicted RBP8.08□□□□□ -1.12
SF3B1-201ENST00000335508 MAP3K15Q6ZN16 1313 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 CCDC69A6NI79 296 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 HLA-DOAP06340 250 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 RBM6P78332 1123 aaKnown RBP8.08□□□□□ -1.12
SF3B1-201ENST00000335508 PLEKHM2Q8IWE5 1019 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 KBTBD3Q8NAB2 608 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 ESR2Q92731 530 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 AXIN2Q9Y2T1 843 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 TSPOAP1O95153 1857 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 SLC4A3P48751 1232 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 SLC9C2Q5TAH2 1124 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 ZNF804AQ7Z570 1209 aa8.08□□□□□ -1.12
SF3B1-201ENST00000335508 USP5P45974 858 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 IKQ13123 557 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 MCMDC2Q4G0Z9 681 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 ESYT1Q9BSJ8 1104 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 KIF5BP33176 963 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 ZC3H13Q5T200 1668 aaKnown RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 WDR66Q8TBY9 1149 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 ZBTB1Q9Y2K1 713 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 PUM3Q15397 648 aaKnown RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 DNTTIP2Q5QJE6 756 aaKnown RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 NAA16Q6N069 864 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 ZNF444Q8N0Y2 327 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 NCOA7Q8NI08 942 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 DENND2AQ9ULE3 1009 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 DHX8Q14562 1220 aaKnown RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 ZBTB38Q8NAP3 1195 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 MAST3O60307 1309 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 RAD21O60216 631 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 POLR3DP05423 398 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 MCM5P33992 734 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 TTC6Q86TZ1 520 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 CRACR2BQ8N4Y2 399 aaPredicted RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 CNKSR1Q969H4 720 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 HDAC9Q9UKV0 1011 aa8.07□□□□□ -1.12
SF3B1-201ENST00000335508 PPRC1Q5VV67 1664 aaKnown RBP8.07□□□□□ -1.12
SF3B1-201ENST00000335508 TPM1P09493 284 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 ATP5JP18859 108 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 UBE4AQ14139 1066 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 KRT27Q7Z3Y8 459 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 SLIT1O75093 1534 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 A0A1B0GUL7 405 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 PATL2C9JE40 543 aaKnown RBP8.06□□□□□ -1.12
SF3B1-201ENST00000335508 LETM1O95202 739 aaPredicted RBP8.06□□□□□ -1.12
SF3B1-201ENST00000335508 NEK1Q96PY6 1258 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 GZF1Q9H116 711 aaPredicted RBP8.06□□□□□ -1.12
SF3B1-201ENST00000335508 OSBPL3Q9H4L5 887 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 MROH5Q6ZUA9 1318 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 MSNP26038 577 aaKnown RBP8.06□□□□□ -1.12
SF3B1-201ENST00000335508 RBM5P52756 815 aaKnown RBP eCLIP8.06□□□□□ -1.12
SF3B1-201ENST00000335508 PPP2R5BQ15173 497 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 CCDC12Q8WUD4 166 aaPredicted RBP8.06□□□□□ -1.12
SF3B1-201ENST00000335508 APPBP2Q92624 585 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 ZNF622Q969S3 477 aaKnown RBP eCLIP8.06□□□□□ -1.123e-7■■□□□ 13.3
SF3B1-201ENST00000335508 CCDC43Q96MW1 224 aaKnown RBP8.06□□□□□ -1.12
SF3B1-201ENST00000335508 KRT23Q9C075 422 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 PAG1Q9NWQ8 432 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 ASAP1Q9ULH1 1129 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 CASTP20810 708 aaKnown RBP8.06□□□□□ -1.12
SF3B1-201ENST00000335508 SEPT12Q8IYM1 358 aa8.06□□□□□ -1.12
SF3B1-201ENST00000335508 RPS6KA4O75676 772 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 IPO7O95373 1038 aaKnown RBP8.05□□□□□ -1.12
SF3B1-201ENST00000335508 ITGA6P23229 1130 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 RXRBP28702 533 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 VPS53Q5VIR6 699 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 PA2G4Q9UQ80 394 aaKnown RBP8.05□□□□□ -1.12
SF3B1-201ENST00000335508 OVOS2A0A0G2JMS6 1433 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 VPS72Q15906 364 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 DRC7Q8IY82 874 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 SUPT20HQ8NEM7 779 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 PIGBQ92521 554 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 TM6SF1Q9BZW5 370 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 NAT10Q9H0A0 1025 aaKnown RBP8.05□□□□□ -1.12
SF3B1-201ENST00000335508 CABP5Q9NP86 173 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 CROCC2H7BZ55 1655 aa8.05□□□□□ -1.12
SF3B1-201ENST00000335508 MINDY4BA8MYZ0 360 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms