RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 RFX7Q2KHR2 1363 aa17.46■□□□□ 0.39
TPM3-206ENST00000330188 ST3GAL1Q11201 340 aa17.45■□□□□ 0.38
TPM3-206ENST00000330188 LRSAM1Q6UWE0 723 aa17.45■□□□□ 0.38
TPM3-206ENST00000330188 PSMA5P28066 241 aa17.45■□□□□ 0.38
TPM3-206ENST00000330188 GDPD2Q9HCC8 539 aa17.45■□□□□ 0.38
TPM3-206ENST00000330188 ZNF335Q9H4Z2 1342 aaPredicted RBP17.45■□□□□ 0.38
TPM3-206ENST00000330188 TAF5LO75529 589 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 COL9A3Q14050 684 aaPredicted RBP17.44■□□□□ 0.38
TPM3-206ENST00000330188 ME3Q16798 604 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 RNF20Q5VTR2 975 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 USP48Q86UV5 1035 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 TMEM87AQ8NBN3 555 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 SYCE3A1L190 88 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 GADD45BO75293 160 aaPredicted RBP17.44■□□□□ 0.38
TPM3-206ENST00000330188 GJB2P29033 226 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 HAUS7Q99871 368 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 STRN4Q9NRL3 753 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 CHMP3Q9Y3E7 222 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 NDUFB9Q9Y6M9 179 aa17.44■□□□□ 0.38
TPM3-206ENST00000330188 NHSL1Q5SYE7 1610 aa17.43■□□□□ 0.38
TPM3-206ENST00000330188 ZNF609O15014 1411 aa17.43■□□□□ 0.38
TPM3-206ENST00000330188 ATG9AQ7Z3C6 839 aa17.43■□□□□ 0.38
TPM3-206ENST00000330188 TRIM44Q96DX7 344 aaPredicted RBP17.43■□□□□ 0.38
TPM3-206ENST00000330188 ZBTB3Q9H5J0 574 aa17.43■□□□□ 0.38
TPM3-206ENST00000330188 TAF6LQ9Y6J9 622 aa17.43■□□□□ 0.38
TPM3-206ENST00000330188 F13A1P00488 732 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 ADRA2BP18089 450 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 TSGA10IPQ3SY00 556 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 USPL1Q5W0Q7 1092 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 CCDC191Q8NCU4 936 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 DNAJC2Q99543 621 aaKnown RBP17.42■□□□□ 0.38
TPM3-206ENST00000330188 HMG20BQ9P0W2 317 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 TPCN1Q9ULQ1 816 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 CLCN1P35523 988 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 BLOC1S2Q6QNY1 142 aa17.42■□□□□ 0.38
TPM3-206ENST00000330188 ANP32BQ92688 251 aaKnown RBP17.42■□□□□ 0.38
TPM3-206ENST00000330188 RPS6KB1P23443 525 aa17.41■□□□□ 0.38
TPM3-206ENST00000330188 ALDH8A1Q9H2A2 487 aaPredicted RBP17.41■□□□□ 0.38
TPM3-206ENST00000330188 CNPY2Q9Y2B0 182 aa17.41■□□□□ 0.38
TPM3-206ENST00000330188 ESPNB1AK53 854 aa17.41■□□□□ 0.38
TPM3-206ENST00000330188 EVA1CP58658 441 aa17.41■□□□□ 0.38
TPM3-206ENST00000330188 NECAB1Q8N987 351 aa17.41■□□□□ 0.38
TPM3-206ENST00000330188 GPR108Q9NPR9 543 aa17.41■□□□□ 0.38
TPM3-206ENST00000330188 CHGBP05060 677 aa17.4■□□□□ 0.38
TPM3-206ENST00000330188 SYAP1Q96A49 352 aaPredicted RBP17.4■□□□□ 0.38
TPM3-206ENST00000330188 MTMR6Q9Y217 621 aa17.4■□□□□ 0.38
TPM3-206ENST00000330188 DTNBO60941 627 aa17.39■□□□□ 0.38
TPM3-206ENST00000330188 IL15P40933 162 aaPredicted RBP17.39■□□□□ 0.38
TPM3-206ENST00000330188 ANKRD1Q15327 319 aa17.39■□□□□ 0.38
TPM3-206ENST00000330188 DDX46Q7L014 1031 aaKnown RBP17.39■□□□□ 0.38
TPM3-206ENST00000330188 TOB2Q14106 344 aaPredicted RBP17.39■□□□□ 0.37
TPM3-206ENST00000330188 CCDC129Q6ZRS4 1044 aa17.39■□□□□ 0.37
TPM3-206ENST00000330188 KBTBD3Q8NAB2 608 aa17.39■□□□□ 0.37
TPM3-206ENST00000330188 ISCA1Q9BUE6 129 aa17.39■□□□□ 0.37
TPM3-206ENST00000330188 ATP6V1DQ9Y5K8 247 aa17.39■□□□□ 0.37
TPM3-206ENST00000330188 PALLDQ8WX93 1383 aa17.39■□□□□ 0.37
TPM3-206ENST00000330188 LRRC24Q50LG9 513 aa17.38■□□□□ 0.37
TPM3-206ENST00000330188 TCEANC2Q96MN5 208 aa17.38■□□□□ 0.37
TPM3-206ENST00000330188 SEC62Q99442 399 aaKnown RBP17.38■□□□□ 0.37
TPM3-206ENST00000330188 TMOD3Q9NYL9 352 aa17.38■□□□□ 0.37
TPM3-206ENST00000330188 EYA2O00167 538 aa17.38■□□□□ 0.37
TPM3-206ENST00000330188 MCMDC2Q4G0Z9 681 aa17.38■□□□□ 0.37
TPM3-206ENST00000330188 ZNF594Q96JF6 807 aaPredicted RBP17.38■□□□□ 0.37
TPM3-206ENST00000330188 NEUROD6Q96NK8 337 aa17.38■□□□□ 0.37
TPM3-206ENST00000330188 SH3TC1Q8TE82 1336 aa17.37■□□□□ 0.37
TPM3-206ENST00000330188 KRT32Q14532 448 aa17.37■□□□□ 0.37
TPM3-206ENST00000330188 ATG3Q9NT62 314 aa17.37■□□□□ 0.37
TPM3-206ENST00000330188 CCDC9Q9Y3X0 531 aaKnown RBP17.37■□□□□ 0.37
TPM3-206ENST00000330188 ITGB4P16144 1822 aa17.37■□□□□ 0.37
TPM3-206ENST00000330188 CIAO1O76071 339 aa17.36■□□□□ 0.37
TPM3-206ENST00000330188 TIMM10P62072 90 aa17.36■□□□□ 0.37
TPM3-206ENST00000330188 U3KPZ7 1027 aaPredicted RBP17.36■□□□□ 0.37
TPM3-206ENST00000330188 UBE2HP62256 183 aa17.36■□□□□ 0.37
TPM3-206ENST00000330188 TCIRG1Q13488 830 aa17.36■□□□□ 0.37
TPM3-206ENST00000330188 PDLIM2Q96JY6 352 aa17.36■□□□□ 0.37
TPM3-206ENST00000330188 PAG1Q9NWQ8 432 aa17.36■□□□□ 0.37
TPM3-206ENST00000330188 SPEF2Q9C093 1822 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 LAMA4Q16363 1823 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 VPS37CA5D8V6 355 aaPredicted RBP17.35■□□□□ 0.37
TPM3-206ENST00000330188 GOLIM4O00461 696 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 FIBPO43427 364 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 PHF14O94880 888 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 VSIG10Q8N0Z9 540 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 PIGBQ92521 554 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 NEK1Q96PY6 1258 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 PUS3Q9BZE2 481 aaKnown RBP17.35■□□□□ 0.37
TPM3-206ENST00000330188 TSPY26PQ9H489 355 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 ASAP1Q9ULH1 1129 aa17.35■□□□□ 0.37
TPM3-206ENST00000330188 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.34■□□□□ 0.37
TPM3-206ENST00000330188 CYP21A2P08686 494 aa17.34■□□□□ 0.37
TPM3-206ENST00000330188 DNM1Q05193 864 aaKnown RBP17.34■□□□□ 0.37
TPM3-206ENST00000330188 TRIM28Q13263 835 aaKnown RBP17.34■□□□□ 0.37
TPM3-206ENST00000330188 DNAJC10Q8IXB1 793 aa17.34■□□□□ 0.37
TPM3-206ENST00000330188 A0A1B0GUL7 405 aa17.33■□□□□ 0.37
TPM3-206ENST00000330188 PDIA4P13667 645 aaKnown RBP17.33■□□□□ 0.37
TPM3-206ENST00000330188 CCDC183Q5T5S1 534 aa17.33■□□□□ 0.37
TPM3-206ENST00000330188 LARP1BQ659C4 914 aaKnown RBP17.33■□□□□ 0.37
TPM3-206ENST00000330188 TICAM2Q86XR7 235 aa17.33■□□□□ 0.37
TPM3-206ENST00000330188 HELLSQ9NRZ9 838 aa17.33■□□□□ 0.37
TPM3-206ENST00000330188 TEX13AQ9BXU3 409 aaPredicted RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms