RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TBCAO75347 108 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 DAB2P98082 770 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 COQ7Q99807 217 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 TNMDQ9H2S6 317 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 Q9H521 79 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 DKK3Q9UBP4 350 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 RAB11FIP3O75154 756 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 MUM1Q2TAK8 710 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 FERMT1Q9BQL6 677 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 CEP162Q5TB80 1403 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 SFSWAPQ12872 951 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 MRGBPQ9NV56 204 aa8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 CFDP1Q9UEE9 299 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-201ENST00000313860 NBPF26B4DH59 902 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 PDE4AP27815 886 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 IRX5P78411 483 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 PPP2R5CQ13362 524 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 NBPF14Q5TI25 921 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 FAM186BQ8IYM0 893 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 NBPF15Q8N660 670 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 C18orf25Q96B23 403 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 VPS18Q9P253 973 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 FCHSD2O94868 740 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 KRT5P13647 590 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 ME1P48163 572 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 RRS1Q15050 365 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 STK38Q15208 465 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 MED4Q9NPJ6 270 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 SAMD15Q9P1V8 674 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 HSD3B2P26439 372 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 CKAP4Q07065 602 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 CACNA2D4Q7Z3S7 1137 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 LRRC45Q96CN5 670 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 DDX28Q9NUL7 540 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 SCINQ9Y6U3 715 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 PPP1R21Q6ZMI0 780 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 IQCA1Q86XH1 822 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 CEP70Q8NHQ1 597 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 IFT74Q96LB3 600 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 MMRN2Q9H8L6 949 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 SYNPO2Q9UMS6 1093 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 CCDC192P0DO97 292 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 CCDC15Q0P6D6 951 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 BIRC2Q13490 618 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 CCDC85BQ15834 202 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 AFAP1Q8N556 730 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 PPP1R14BQ96C90 147 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 KCNH8Q96L42 1107 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 STMN3Q9NZ72 180 aa8.66□□□□□ -1.02
LIMCH1-201ENST00000313860 ERCC6LQ2NKX8 1250 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 GRAMD4Q6IC98 578 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 RPAP2Q8IXW5 612 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 RNF10Q8N5U6 811 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 MSL3Q8N5Y2 521 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 TNIKQ9UKE5 1360 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 EEF1DP29692 281 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 NEK2P51955 445 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 KCNA1Q09470 495 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 CCDC122Q5T0U0 273 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 NGEFQ8N5V2 710 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 NAA15Q9BXJ9 866 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 TBC1D2Q9BYX2 928 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 RNPEPQ9H4A4 650 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 PRKRIP1Q9H875 184 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 SLC4A7Q9Y6M7 1214 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 DDIT3P35638 169 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 EIF2B5Q13144 721 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 EHBP1Q8NDI1 1231 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 CENPKQ9BS16 269 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 CARD11Q9BXL7 1154 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 TRPC5Q9UL62 973 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 ITM2BQ9Y287 266 aa8.65□□□□□ -1.02
LIMCH1-201ENST00000313860 HLA-DPA1P20036 260 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 MCUR1Q96AQ8 359 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 ZNF653Q96CK0 615 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 TTC14Q96N46 770 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 PPP1R9AQ9ULJ8 1098 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 LZTS1Q9Y250 596 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 MRPS15P82914 257 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 ATP2B2Q01814 1243 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 MAP3K10Q02779 954 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 KIF18AQ8NI77 898 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 CPLX3Q8WVH0 158 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 NR1H4Q96RI1 486 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 PLCB1Q9NQ66 1216 aa8.65□□□□□ -1.03
LIMCH1-201ENST00000313860 PLIN1O60240 522 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 MRPS35P82673 323 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 C16orf45Q96MC5 204 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 SH3GL3Q99963 347 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 STK38LQ9Y2H1 464 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 ZNF711Q9Y462 761 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 CD2APQ9Y5K6 639 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 ARF4P18085 180 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 ACTN2P35609 894 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 POLE2P56282 527 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 SESN3P58005 492 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 TRPC3Q13507 836 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 ZYG11AQ6WRX3 759 aa8.64□□□□□ -1.03
LIMCH1-201ENST00000313860 NANOGNBQ7Z5D8 188 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms