RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 PCDHB15Q9Y5E8 787 aa22.74■■□□□ 1.23
HMGA1-201ENST00000311487 PNMA6EA0A0J9YXQ4 647 aa22.73■■□□□ 1.23
HMGA1-201ENST00000311487 C2CD5Q86YS7 1000 aa22.73■■□□□ 1.23
HMGA1-201ENST00000311487 ZNF594Q96JF6 807 aaPredicted RBP22.73■■□□□ 1.23
HMGA1-201ENST00000311487 ANKRD31Q8N7Z5 1873 aa22.73■■□□□ 1.23
HMGA1-201ENST00000311487 NLGN2Q8NFZ4 835 aa22.72■■□□□ 1.23
HMGA1-201ENST00000311487 ZNF622Q969S3 477 aaKnown RBP eCLIP22.72■■□□□ 1.23
HMGA1-201ENST00000311487 FHDC1Q9C0D6 1143 aaPredicted RBP22.72■■□□□ 1.23
HMGA1-201ENST00000311487 TAF1P21675 1872 aa22.72■■□□□ 1.23
HMGA1-201ENST00000311487 DPEP1P16444 411 aa22.71■■□□□ 1.23
HMGA1-201ENST00000311487 PDE6BP35913 854 aa22.71■■□□□ 1.23
HMGA1-201ENST00000311487 PLA2G12BQ9BX93 195 aa22.71■■□□□ 1.23
HMGA1-201ENST00000311487 SRGAP3O43295 1099 aa22.7■■□□□ 1.23
HMGA1-201ENST00000311487 CEP85Q6P2H3 762 aa22.7■■□□□ 1.23
HMGA1-201ENST00000311487 SIRT2Q8IXJ6 389 aa22.7■■□□□ 1.23
HMGA1-201ENST00000311487 RPGRQ92834 1020 aaKnown RBP22.7■■□□□ 1.23
HMGA1-201ENST00000311487 C10orf71Q711Q0 1435 aa22.7■■□□□ 1.22
HMGA1-201ENST00000311487 COL4A1P02462 1669 aa22.7■■□□□ 1.22
HMGA1-201ENST00000311487 ITGA6P23229 1130 aa22.7■■□□□ 1.22
HMGA1-201ENST00000311487 BCL11AQ9H165 835 aa22.7■■□□□ 1.22
HMGA1-201ENST00000311487 ZNF219Q9P2Y4 722 aaPredicted RBP22.7■■□□□ 1.22
HMGA1-201ENST00000311487 H0YIN7 160 aa22.69■■□□□ 1.22
HMGA1-201ENST00000311487 CSF1RP07333 972 aa22.69■■□□□ 1.22
HMGA1-201ENST00000311487 CCDC152Q4G0S7 254 aa22.69■■□□□ 1.22
HMGA1-201ENST00000311487 PPP4R2Q9NY27 417 aa22.69■■□□□ 1.22
HMGA1-201ENST00000311487 PA2G4Q9UQ80 394 aaKnown RBP22.69■■□□□ 1.22
HMGA1-201ENST00000311487 LAMB2P55268 1798 aa22.69■■□□□ 1.22
HMGA1-201ENST00000311487 SRGNP10124 158 aa22.69■■□□□ 1.22
HMGA1-201ENST00000311487 CELF1Q92879 486 aaKnown RBP22.69■■□□□ 1.22
HMGA1-201ENST00000311487 SF3B3Q15393 1217 aaKnown RBP22.68■■□□□ 1.22
HMGA1-201ENST00000311487 RABL6Q3YEC7 729 aaPredicted RBP22.68■■□□□ 1.22
HMGA1-201ENST00000311487 SIL1Q9H173 461 aa22.68■■□□□ 1.22
HMGA1-201ENST00000311487 CRY2Q49AN0 593 aa22.67■■□□□ 1.22
HMGA1-201ENST00000311487 CHMP4BQ9H444 224 aaKnown RBP22.67■■□□□ 1.22
HMGA1-201ENST00000311487 ATP8B2P98198 1209 aa22.67■■□□□ 1.22
HMGA1-201ENST00000311487 IFIT5Q13325 482 aaKnown RBP22.67■■□□□ 1.22
HMGA1-201ENST00000311487 CCDC57Q2TAC2 916 aa22.67■■□□□ 1.22
HMGA1-201ENST00000311487 OLFM4Q6UX06 510 aa22.67■■□□□ 1.22
HMGA1-201ENST00000311487 DDX46Q7L014 1031 aaKnown RBP22.67■■□□□ 1.22
HMGA1-201ENST00000311487 KLRG2A4D1S0 409 aaPredicted RBP22.66■■□□□ 1.22
HMGA1-201ENST00000311487 HSP90B1P14625 803 aaKnown RBP22.66■■□□□ 1.22
HMGA1-201ENST00000311487 KCNA3P22001 575 aa22.66■■□□□ 1.22
HMGA1-201ENST00000311487 MYH3P11055 1940 aa22.66■■□□□ 1.22
HMGA1-201ENST00000311487 COL11A2P13942 1736 aaPredicted RBP22.66■■□□□ 1.22
HMGA1-201ENST00000311487 APBB1O00213 710 aa22.65■■□□□ 1.22
HMGA1-201ENST00000311487 TAF7LQ5H9L4 462 aa22.65■■□□□ 1.22
HMGA1-201ENST00000311487 SYT17Q9BSW7 474 aa22.65■■□□□ 1.22
HMGA1-201ENST00000311487 PUS3Q9BZE2 481 aaKnown RBP22.65■■□□□ 1.22
HMGA1-201ENST00000311487 HDAC5Q9UQL6 1122 aa22.65■■□□□ 1.22
HMGA1-201ENST00000311487 CD2APQ9Y5K6 639 aa22.65■■□□□ 1.22
HMGA1-201ENST00000311487 ANKRD18BA2A2Z9 1011 aa22.64■■□□□ 1.21
HMGA1-201ENST00000311487 MASTLQ96GX5 879 aa22.64■■□□□ 1.21
HMGA1-201ENST00000311487 RBM17Q96I25 401 aaKnown RBP22.64■■□□□ 1.21
HMGA1-201ENST00000311487 NPR1P16066 1061 aa22.63■■□□□ 1.21
HMGA1-201ENST00000311487 RFX5P48382 616 aaPredicted RBP22.63■■□□□ 1.21
HMGA1-201ENST00000311487 IGHDP01880 384 aa22.62■■□□□ 1.21
HMGA1-201ENST00000311487 PTPN12Q05209 780 aaKnown RBP22.62■■□□□ 1.21
HMGA1-201ENST00000311487 LRRC24Q50LG9 513 aa22.62■■□□□ 1.21
HMGA1-201ENST00000311487 TGFB2P61812 414 aa22.61■■□□□ 1.21
HMGA1-201ENST00000311487 RPAP2Q8IXW5 612 aaPredicted RBP22.61■■□□□ 1.21
HMGA1-201ENST00000311487 EXOC6BQ9Y2D4 811 aa22.61■■□□□ 1.21
HMGA1-201ENST00000311487 RPS8P62241 208 aaKnown RBP22.61■■□□□ 1.21
HMGA1-201ENST00000311487 MTX1Q13505 466 aa22.61■■□□□ 1.21
HMGA1-201ENST00000311487 ANKRD18AQ8IVF6 992 aa22.61■■□□□ 1.21
HMGA1-201ENST00000311487 CACNA1SQ13698 1873 aa22.6■■□□□ 1.21
HMGA1-201ENST00000311487 GRAPQ13588 217 aa22.6■■□□□ 1.21
HMGA1-201ENST00000311487 POLA2Q14181 598 aa22.6■■□□□ 1.21
HMGA1-201ENST00000311487 PRPF40BQ6NWY9 871 aaKnown RBP22.6■■□□□ 1.21
HMGA1-201ENST00000311487 HELBQ8NG08 1087 aaPredicted RBP22.6■■□□□ 1.21
HMGA1-201ENST00000311487 GRAPLQ8TC17 118 aaPredicted RBP22.6■■□□□ 1.21
HMGA1-201ENST00000311487 SSH3Q8TE77 659 aa22.6■■□□□ 1.21
HMGA1-201ENST00000311487 RIC1Q4ADV7 1423 aa22.6■■□□□ 1.21
HMGA1-201ENST00000311487 KIF13BQ9NQT8 1826 aa22.6■■□□□ 1.21
HMGA1-201ENST00000311487 WTIPA6NIX2 430 aaPredicted RBP22.59■■□□□ 1.21
HMGA1-201ENST00000311487 SURF6O75683 361 aaKnown RBP22.59■■□□□ 1.21
HMGA1-201ENST00000311487 HOXA10P31260 410 aaPredicted RBP22.59■■□□□ 1.21
HMGA1-201ENST00000311487 LDHAL6AQ6ZMR3 332 aa22.59■■□□□ 1.21
HMGA1-201ENST00000311487 MPHOSPH8Q99549 860 aa22.59■■□□□ 1.21
HMGA1-201ENST00000311487 SPEF2Q9C093 1822 aa22.59■■□□□ 1.21
HMGA1-201ENST00000311487 B4GALNT3Q6L9W6 998 aa22.59■■□□□ 1.21
HMGA1-201ENST00000311487 CDC5LQ99459 802 aaKnown RBP22.59■■□□□ 1.21
HMGA1-201ENST00000311487 IGHMBP2P38935 993 aaKnown RBP22.58■■□□□ 1.21
HMGA1-201ENST00000311487 STYK1Q6J9G0 422 aa22.58■■□□□ 1.21
HMGA1-201ENST00000311487 CNNM1Q9NRU3 951 aa22.58■■□□□ 1.21
HMGA1-201ENST00000311487 PIM2Q9P1W9 311 aa22.58■■□□□ 1.21
HMGA1-201ENST00000311487 BCS1LQ9Y276 419 aa22.58■■□□□ 1.21
HMGA1-201ENST00000311487 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.58■■□□□ 1.21
HMGA1-201ENST00000311487 C21orf2O43822 256 aa22.57■■□□□ 1.2
HMGA1-201ENST00000311487 TTLL6Q8N841 843 aa22.57■■□□□ 1.2
HMGA1-201ENST00000311487 CRAMP1Q96RY5 1269 aa22.57■■□□□ 1.2
HMGA1-201ENST00000311487 SNAP23O00161 211 aa22.57■■□□□ 1.2
HMGA1-201ENST00000311487 PPEF1O14829 653 aaPredicted RBP22.57■■□□□ 1.2
HMGA1-201ENST00000311487 ALDH1B1P30837 517 aa22.57■■□□□ 1.2
HMGA1-201ENST00000311487 KIAA1551Q9HCM1 1747 aa22.56■■□□□ 1.2
HMGA1-201ENST00000311487 SLX4Q8IY92 1834 aa22.56■■□□□ 1.2
HMGA1-201ENST00000311487 TAF5LO75529 589 aa22.56■■□□□ 1.2
HMGA1-201ENST00000311487 OS9Q13438 667 aaPredicted RBP22.56■■□□□ 1.2
HMGA1-201ENST00000311487 TSHZ2Q9NRE2 1034 aa22.56■■□□□ 1.2
HMGA1-201ENST00000311487 HMMRO75330 724 aa22.55■■□□□ 1.2
HMGA1-201ENST00000311487 CNKSR1Q969H4 720 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms