RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 NEK1Q96PY6 1258 aa17.32■□□□□ 0.36
CCNF-201ENST00000293968 RIMBP3CA6NJZ7 1639 aa17.31■□□□□ 0.36
CCNF-201ENST00000293968 RIMBP3BA6NNM3 1639 aa17.31■□□□□ 0.36
CCNF-201ENST00000293968 RIMBP3Q9UFD9 1639 aa17.31■□□□□ 0.36
CCNF-201ENST00000293968 SASH1O94885 1247 aa17.31■□□□□ 0.36
CCNF-201ENST00000293968 DDX58O95786 925 aaKnown RBP17.31■□□□□ 0.36
CCNF-201ENST00000293968 GTPBP4Q9BZE4 634 aaKnown RBP17.31■□□□□ 0.36
CCNF-201ENST00000293968 CHGBP05060 677 aa17.31■□□□□ 0.36
CCNF-201ENST00000293968 PTPN14Q15678 1187 aa17.31■□□□□ 0.36
CCNF-201ENST00000293968 SKILP12757 684 aa17.31■□□□□ 0.36
CCNF-201ENST00000293968 PIP4K2AP48426 406 aaPredicted RBP17.31■□□□□ 0.36
CCNF-201ENST00000293968 NEXNQ0ZGT2 675 aa17.3■□□□□ 0.36
CCNF-201ENST00000293968 TOB2Q14106 344 aaPredicted RBP17.3■□□□□ 0.36
CCNF-201ENST00000293968 PLEKHO1Q53GL0 409 aaPredicted RBP17.3■□□□□ 0.36
CCNF-201ENST00000293968 SDF4Q9BRK5 362 aa17.3■□□□□ 0.36
CCNF-201ENST00000293968 CFAP45Q9UL16 551 aa17.3■□□□□ 0.36
CCNF-201ENST00000293968 ITSN1Q15811 1721 aa17.3■□□□□ 0.36
CCNF-201ENST00000293968 PEAK1Q9H792 1746 aa17.3■□□□□ 0.36
CCNF-201ENST00000293968 SYTL4Q96C24 671 aaPredicted RBP17.3■□□□□ 0.36
CCNF-201ENST00000293968 SEC62Q99442 399 aaKnown RBP17.3■□□□□ 0.36
CCNF-201ENST00000293968 C3P01024 1663 aa17.3■□□□□ 0.36
CCNF-201ENST00000293968 RICTORQ6R327 1708 aa17.29■□□□□ 0.36
CCNF-201ENST00000293968 SF3A1Q15459 793 aaKnown RBP17.29■□□□□ 0.36
CCNF-201ENST00000293968 C11orf57Q6ZUT1 292 aaPredicted RBP17.29■□□□□ 0.36
CCNF-201ENST00000293968 ADCY9O60503 1353 aa17.29■□□□□ 0.36
CCNF-201ENST00000293968 UTP14CQ5TAP6 766 aaKnown RBP17.29■□□□□ 0.36
CCNF-201ENST00000293968 DDX46Q7L014 1031 aaKnown RBP17.29■□□□□ 0.36
CCNF-201ENST00000293968 ELP1O95163 1332 aa17.29■□□□□ 0.36
CCNF-201ENST00000293968 NEUROD6Q96NK8 337 aa17.29■□□□□ 0.36
CCNF-201ENST00000293968 BABAM1Q9NWV8 329 aa17.29■□□□□ 0.36
CCNF-201ENST00000293968 ALDH1L1O75891 902 aa17.29■□□□□ 0.36
CCNF-201ENST00000293968 PSME1Q06323 249 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 SMC2O95347 1197 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 PAXBP1Q9Y5B6 917 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 MON2Q7Z3U7 1717 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 USP27XA6NNY8 438 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 CHST3Q7LGC8 479 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 TDRD7Q8NHU6 1098 aaKnown RBP17.28■□□□□ 0.36
CCNF-201ENST00000293968 ANKRD7Q92527 254 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 MYD88Q99836 296 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 NRKQ7Z2Y5 1582 aa17.28■□□□□ 0.36
CCNF-201ENST00000293968 CCDC69A6NI79 296 aa17.27■□□□□ 0.36
CCNF-201ENST00000293968 SLC39A6Q13433 755 aa17.27■□□□□ 0.36
CCNF-201ENST00000293968 CGNQ9P2M7 1197 aaKnown RBP17.27■□□□□ 0.36
CCNF-201ENST00000293968 GORABQ5T7V8 394 aa17.27■□□□□ 0.36
CCNF-201ENST00000293968 STX1AQ16623 288 aa17.27■□□□□ 0.35
CCNF-201ENST00000293968 PLA2G4DQ86XP0 818 aa17.27■□□□□ 0.35
CCNF-201ENST00000293968 AOPEPQ8N6M6 819 aa17.27■□□□□ 0.35
CCNF-201ENST00000293968 FSIP1Q8NA03 581 aa17.27■□□□□ 0.35
CCNF-201ENST00000293968 KRT32Q14532 448 aa17.26■□□□□ 0.35
CCNF-201ENST00000293968 LINS1Q8NG48 757 aa17.26■□□□□ 0.35
CCNF-201ENST00000293968 NCOA5Q9HCD5 579 aaKnown RBP17.26■□□□□ 0.35
CCNF-201ENST00000293968 OGFRQ9NZT2 677 aa17.26■□□□□ 0.35
CCNF-201ENST00000293968 USP42Q9H9J4 1324 aaKnown RBP17.26■□□□□ 0.35
CCNF-201ENST00000293968 PDIA4P13667 645 aaKnown RBP17.26■□□□□ 0.35
CCNF-201ENST00000293968 TECPR2O15040 1411 aa17.26■□□□□ 0.35
CCNF-201ENST00000293968 BIN1O00499 593 aa17.26■□□□□ 0.35
CCNF-201ENST00000293968 APOBRQ0VD83 1088 aa17.26■□□□□ 0.35
CCNF-201ENST00000293968 GTF3C6Q969F1 213 aa17.26■□□□□ 0.35
CCNF-201ENST00000293968 HMG20BQ9P0W2 317 aa17.26■□□□□ 0.35
CCNF-201ENST00000293968 ZNF215Q9UL58 517 aaPredicted RBP17.25■□□□□ 0.35
CCNF-201ENST00000293968 CTIFO43310 598 aaKnown RBP17.25■□□□□ 0.35
CCNF-201ENST00000293968 LRRC8AQ8IWT6 810 aa17.25■□□□□ 0.35
CCNF-201ENST00000293968 TAF5LO75529 589 aa17.25■□□□□ 0.35
CCNF-201ENST00000293968 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.25■□□□□ 0.35
CCNF-201ENST00000293968 ESCO1Q5FWF5 840 aa17.25■□□□□ 0.35
CCNF-201ENST00000293968 CEP57L1Q8IYX8 460 aa17.25■□□□□ 0.35
CCNF-201ENST00000293968 FEZ1Q99689 392 aa17.25■□□□□ 0.35
CCNF-201ENST00000293968 TFCP2Q12800 502 aa17.24■□□□□ 0.35
CCNF-201ENST00000293968 ISM2Q6H9L7 571 aa17.24■□□□□ 0.35
CCNF-201ENST00000293968 RAB11FIP4Q86YS3 637 aa17.24■□□□□ 0.35
CCNF-201ENST00000293968 ERICH4A6NGS2 130 aa17.24■□□□□ 0.35
CCNF-201ENST00000293968 GIGYF1O75420 1035 aaPredicted RBP17.24■□□□□ 0.35
CCNF-201ENST00000293968 SLFNL1Q499Z3 407 aa17.24■□□□□ 0.35
CCNF-201ENST00000293968 AKAP4Q5JQC9 854 aa17.24■□□□□ 0.35
CCNF-201ENST00000293968 HOMER1Q86YM7 354 aa17.24■□□□□ 0.35
CCNF-201ENST00000293968 MTX1Q13505 466 aa17.24■□□□□ 0.35
CCNF-201ENST00000293968 RNMTO43148 476 aaKnown RBP17.23■□□□□ 0.35
CCNF-201ENST00000293968 RESTQ13127 1097 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 PODXL2Q9NZ53 605 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 PXDNLA1KZ92 1463 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 ADAMTS13Q76LX8 1427 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 ATP5J2-PTCD1G3V325 749 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 PTCD1O75127 700 aaKnown RBP17.23■□□□□ 0.35
CCNF-201ENST00000293968 HOXB7P09629 217 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 KCNA6P17658 529 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 SCRN1Q12765 414 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 ELF2Q15723 593 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 ZSCAN16Q9H4T2 348 aaPredicted RBP17.23■□□□□ 0.35
CCNF-201ENST00000293968 ANO10Q9NW15 660 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 PTPDC1A2A3K4 754 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 TSPOAP1O95153 1857 aa17.23■□□□□ 0.35
CCNF-201ENST00000293968 IP6K1Q92551 441 aa17.22■□□□□ 0.35
CCNF-201ENST00000293968 KCNB2Q92953 911 aa17.22■□□□□ 0.35
CCNF-201ENST00000293968 USP28Q96RU2 1077 aa17.22■□□□□ 0.35
CCNF-201ENST00000293968 POLR3DP05423 398 aaPredicted RBP17.22■□□□□ 0.35
CCNF-201ENST00000293968 UBE3BQ7Z3V4 1068 aa17.22■□□□□ 0.35
CCNF-201ENST00000293968 KIF18AQ8NI77 898 aa17.22■□□□□ 0.35
CCNF-201ENST00000293968 XAGE3Q8WTP9 111 aa17.22■□□□□ 0.35
CCNF-201ENST00000293968 ZNF396Q96N95 335 aaPredicted RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms