RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 TNMDQ9H2S6 317 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 NR1I2O75469 434 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 CCDC192P0DO97 292 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 CHRNA2Q15822 529 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 ERC1Q8IUD2 1116 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 PIBF1Q8WXW3 757 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 DBNDD2Q9BQY9 259 aa10.84□□□□□ -0.67
MSH4-201ENST00000263187 H3BQV1 296 aa10.83□□□□□ -0.67
MSH4-201ENST00000263187 TYRO3Q06418 890 aa10.83□□□□□ -0.67
MSH4-201ENST00000263187 NEXNQ0ZGT2 675 aa10.83□□□□□ -0.67
MSH4-201ENST00000263187 IFFO2Q5TF58 517 aa10.83□□□□□ -0.67
MSH4-201ENST00000263187 ZSCAN31Q96LW9 406 aaPredicted RBP10.83□□□□□ -0.67
MSH4-201ENST00000263187 SH2B1Q9NRF2 756 aaPredicted RBP10.83□□□□□ -0.67
MSH4-201ENST00000263187 BABAM1Q9NWV8 329 aa10.83□□□□□ -0.67
MSH4-201ENST00000263187 DBNLQ9UJU6 430 aaKnown RBP10.83□□□□□ -0.67
MSH4-201ENST00000263187 DDX58O95786 925 aaKnown RBP10.83□□□□□ -0.68
MSH4-201ENST00000263187 PDIA6Q15084 440 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 MAP3K11Q16584 847 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 Q6ZUG5 572 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 BRF1Q92994 677 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 ZNF496Q96IT1 587 aaPredicted RBP10.83□□□□□ -0.68
MSH4-201ENST00000263187 FUCA2Q9BTY2 467 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 DNAJC25Q9H1X3 360 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 ALDH1L1O75891 902 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 RPS6KB1P23443 525 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 TRIM5Q9C035 493 aa10.83□□□□□ -0.68
MSH4-201ENST00000263187 NCOA5Q9HCD5 579 aaKnown RBP10.83□□□□□ -0.68
MSH4-201ENST00000263187 PSMA5P28066 241 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 CCDC186Q7Z3E2 898 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 MRVI1Q9Y6F6 885 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 ZNF335Q9H4Z2 1342 aaPredicted RBP10.82□□□□□ -0.68
MSH4-201ENST00000263187 SPDYE4A6NLX3 237 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 NEURL1BA8MQ27 555 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 DYNC1I1O14576 645 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 LETM1O95202 739 aaPredicted RBP10.82□□□□□ -0.68
MSH4-201ENST00000263187 TIMM10P62072 90 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 CBX1P83916 185 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 MTX1Q13505 466 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 UVSSAQ2YD98 709 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 HSP90AB3PQ58FF7 597 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 RNF20Q5VTR2 975 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 ZNF790Q6PG37 636 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 DDX21Q9NR30 783 aaKnown RBP eCLIP10.82□□□□□ -0.68
MSH4-201ENST00000263187 GCKRQ14397 625 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 KCNH5Q8NCM2 988 aa10.82□□□□□ -0.68
MSH4-201ENST00000263187 C16orf45Q96MC5 204 aaPredicted RBP10.82□□□□□ -0.68
MSH4-201ENST00000263187 A0A087WZG4 1122 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 TAF5LO75529 589 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 AMOTQ4VCS5 1084 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 LEO1Q8WVC0 666 aaPredicted RBP10.81□□□□□ -0.68
MSH4-201ENST00000263187 RAPGEF4Q8WZA2 1011 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 ZNF592Q92610 1267 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 IL17RAQ96F46 866 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 CBX8Q9HC52 389 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 COL15A1P39059 1388 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 GOLIM4O00461 696 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 HOXB7P09629 217 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 ARHGEF25Q86VW2 580 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 ZNF594Q96JF6 807 aaPredicted RBP10.81□□□□□ -0.68
MSH4-201ENST00000263187 PGBD1Q96JS3 809 aa10.81□□□□□ -0.68
MSH4-201ENST00000263187 USP42Q9H9J4 1324 aaKnown RBP10.8□□□□□ -0.68
MSH4-201ENST00000263187 APOBRQ0VD83 1088 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 ARID5BQ14865 1188 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 ANKRD13DQ6ZTN6 518 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 ZNF710Q8N1W2 664 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 NEK1Q96PY6 1258 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 TM6SF1Q9BZW5 370 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 SNRKQ9NRH2 765 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 TUBGCP6Q96RT7 1819 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 PXDNLA1KZ92 1463 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 IGSF3O75054 1194 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 CYP21A2P08686 494 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 OTUD7BQ6GQQ9 843 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 MYRIPQ8NFW9 859 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 GPHNQ9NQX3 736 aaPredicted RBP10.8□□□□□ -0.68
MSH4-201ENST00000263187 RIOK3O14730 519 aaKnown RBP10.8□□□□□ -0.68
MSH4-201ENST00000263187 NAA30Q147X3 362 aaPredicted RBP10.8□□□□□ -0.68
MSH4-201ENST00000263187 LMBR1LQ6UX01 489 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 FAM200AQ8TCP9 573 aa10.8□□□□□ -0.68
MSH4-201ENST00000263187 HAND2P61296 217 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 TNNI3KQ59H18 835 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 FPGT-TNNI3KV9GXZ4 949 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 RGPD2P0DJD1 1756 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 DCCP43146 1447 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 ADGRL3Q9HAR2 1447 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 TERF1P54274 439 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 PTPN12Q05209 780 aaKnown RBP10.79□□□□□ -0.68
MSH4-201ENST00000263187 KRT28Q7Z3Y7 464 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 TTC5Q8N0Z6 440 aa10.79□□□□□ -0.68
MSH4-201ENST00000263187 ZNF165P49910 485 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 SCRN1Q12765 414 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 TTLL5Q6EMB2 1281 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 STOX1Q6ZVD7 989 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 KIAA1524Q8TCG1 905 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 EPB41L2O43491 1005 aaKnown RBP10.78□□□□□ -0.68
MSH4-201ENST00000263187 PDCP20941 246 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 PPP4R3BQ5MIZ7 849 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 SYTL4Q96C24 671 aaPredicted RBP10.78□□□□□ -0.68
MSH4-201ENST00000263187 GJB4Q9NTQ9 266 aa10.78□□□□□ -0.68
MSH4-201ENST00000263187 KIF3AQ9Y496 699 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms