RNA–Protein interactions for RNA: ENST00000244303.10

HIF3A-202, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,250 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-202ENST00000244303 TOM1L2Q6ZVM7 507 aa17.18■□□□□ 0.34
HIF3A-202ENST00000244303 VPS37CA5D8V6 355 aaPredicted RBP17.18■□□□□ 0.34
HIF3A-202ENST00000244303 PSMA5P28066 241 aa17.18■□□□□ 0.34
HIF3A-202ENST00000244303 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.18■□□□□ 0.34
HIF3A-202ENST00000244303 ZNF589Q86UQ0 364 aaPredicted RBP17.18■□□□□ 0.34
HIF3A-202ENST00000244303 EDC3Q96F86 508 aaKnown RBP17.18■□□□□ 0.34
HIF3A-202ENST00000244303 TAF6LQ9Y6J9 622 aa17.17■□□□□ 0.34
HIF3A-202ENST00000244303 RNF20Q5VTR2 975 aa17.17■□□□□ 0.34
HIF3A-202ENST00000244303 FAM184AQ8NB25 1140 aa17.17■□□□□ 0.34
HIF3A-202ENST00000244303 ZCRB1Q8TBF4 217 aaKnown RBP17.17■□□□□ 0.34
HIF3A-202ENST00000244303 TCEANC2Q96MN5 208 aa17.17■□□□□ 0.34
HIF3A-202ENST00000244303 COPRSQ9NQ92 184 aa17.17■□□□□ 0.34
HIF3A-202ENST00000244303 RFX5P48382 616 aaPredicted RBP17.16■□□□□ 0.34
HIF3A-202ENST00000244303 PTPN12Q05209 780 aaKnown RBP17.16■□□□□ 0.34
HIF3A-202ENST00000244303 BLOC1S2Q6QNY1 142 aa17.16■□□□□ 0.34
HIF3A-202ENST00000244303 JCADQ9P266 1359 aa17.16■□□□□ 0.34
HIF3A-202ENST00000244303 LAMB4A4D0S4 1761 aa17.16■□□□□ 0.34
HIF3A-202ENST00000244303 LETM1O95202 739 aaPredicted RBP17.16■□□□□ 0.34
HIF3A-202ENST00000244303 DBNLQ9UJU6 430 aaKnown RBP17.16■□□□□ 0.34
HIF3A-202ENST00000244303 MCM5P33992 734 aa17.15■□□□□ 0.34
HIF3A-202ENST00000244303 TFCP2Q12800 502 aa17.15■□□□□ 0.34
HIF3A-202ENST00000244303 CSPP1Q1MSJ5 1256 aa17.15■□□□□ 0.34
HIF3A-202ENST00000244303 TNNI3KQ59H18 835 aa17.15■□□□□ 0.34
HIF3A-202ENST00000244303 UBE3BQ7Z3V4 1068 aa17.15■□□□□ 0.34
HIF3A-202ENST00000244303 FPGT-TNNI3KV9GXZ4 949 aa17.15■□□□□ 0.34
HIF3A-202ENST00000244303 PCDH11XQ9BZA7 1347 aa17.14■□□□□ 0.34
HIF3A-202ENST00000244303 PCDH11YQ9BZA8 1340 aa17.14■□□□□ 0.34
HIF3A-202ENST00000244303 RPS6KB1P23443 525 aa17.14■□□□□ 0.33
HIF3A-202ENST00000244303 UVSSAQ2YD98 709 aa17.14■□□□□ 0.33
HIF3A-202ENST00000244303 LARP1BQ659C4 914 aaKnown RBP17.14■□□□□ 0.33
HIF3A-202ENST00000244303 COL5A2P05997 1499 aaPredicted RBP17.14■□□□□ 0.33
HIF3A-202ENST00000244303 ATP5J2-PTCD1G3V325 749 aa17.14■□□□□ 0.33
HIF3A-202ENST00000244303 PTCD1O75127 700 aaKnown RBP17.14■□□□□ 0.33
HIF3A-202ENST00000244303 HCLS1P14317 486 aaPredicted RBP17.14■□□□□ 0.33
HIF3A-202ENST00000244303 ATP5JP18859 108 aa17.14■□□□□ 0.33
HIF3A-202ENST00000244303 NDUFB9Q9Y6M9 179 aa17.14■□□□□ 0.33
HIF3A-202ENST00000244303 GLI3P10071 1580 aa17.14■□□□□ 0.33
HIF3A-202ENST00000244303 TAF5LO75529 589 aa17.13■□□□□ 0.33
HIF3A-202ENST00000244303 PTMAP06454 111 aaKnown RBP17.13■□□□□ 0.33
HIF3A-202ENST00000244303 TOB2Q14106 344 aaPredicted RBP17.13■□□□□ 0.33
HIF3A-202ENST00000244303 ANKRD1Q15327 319 aa17.13■□□□□ 0.33
HIF3A-202ENST00000244303 RABL6Q3YEC7 729 aaPredicted RBP17.13■□□□□ 0.33
HIF3A-202ENST00000244303 COL15A1P39059 1388 aa17.13■□□□□ 0.33
HIF3A-202ENST00000244303 CDC37L1Q7L3B6 337 aa17.13■□□□□ 0.33
HIF3A-202ENST00000244303 CARD10Q9BWT7 1032 aa17.13■□□□□ 0.33
HIF3A-202ENST00000244303 HMG20BQ9P0W2 317 aa17.13■□□□□ 0.33
HIF3A-202ENST00000244303 USP25Q9UHP3 1055 aa17.13■□□□□ 0.33
HIF3A-202ENST00000244303 PARP4Q9UKK3 1724 aaKnown RBP17.12■□□□□ 0.33
HIF3A-202ENST00000244303 A0A087WZG4 1122 aa17.12■□□□□ 0.33
HIF3A-202ENST00000244303 GIMAP6Q6P9H5 292 aa17.12■□□□□ 0.33
HIF3A-202ENST00000244303 ALDH8A1Q9H2A2 487 aaPredicted RBP17.12■□□□□ 0.33
HIF3A-202ENST00000244303 ERVV-2B6SEH9 535 aa17.12■□□□□ 0.33
HIF3A-202ENST00000244303 IL2RBP14784 551 aa17.12■□□□□ 0.33
HIF3A-202ENST00000244303 TSGA10IPQ3SY00 556 aa17.12■□□□□ 0.33
HIF3A-202ENST00000244303 FERMT3Q86UX7 667 aa17.12■□□□□ 0.33
HIF3A-202ENST00000244303 DBNDD2Q9BQY9 259 aa17.11■□□□□ 0.33
HIF3A-202ENST00000244303 FUCA2Q9BTY2 467 aa17.11■□□□□ 0.33
HIF3A-202ENST00000244303 STRN4Q9NRL3 753 aa17.11■□□□□ 0.33
HIF3A-202ENST00000244303 R3HCC1Q9Y3T6 440 aaKnown RBP17.11■□□□□ 0.33
HIF3A-202ENST00000244303 CHGBP05060 677 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 STK3Q13188 491 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 NKX1-1Q15270 411 aaPredicted RBP17.1■□□□□ 0.33
HIF3A-202ENST00000244303 USPL1Q5W0Q7 1092 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 PKNOX2Q96KN3 472 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 DNAJC2Q99543 621 aaKnown RBP17.1■□□□□ 0.33
HIF3A-202ENST00000244303 ZNF609O15014 1411 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 PDCP20941 246 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 EVA1CP58658 441 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 FAM173BQ6P4H8 233 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 CCDC129Q6ZRS4 1044 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 TTC6Q86TZ1 520 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 ZMYND15Q9H091 742 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.1■□□□□ 0.33
HIF3A-202ENST00000244303 LAMA4Q16363 1823 aa17.1■□□□□ 0.33
HIF3A-202ENST00000244303 PDIA4P13667 645 aaKnown RBP17.09■□□□□ 0.33
HIF3A-202ENST00000244303 CASP7P55210 303 aa17.09■□□□□ 0.33
HIF3A-202ENST00000244303 KRT85P78386 507 aa17.09■□□□□ 0.33
HIF3A-202ENST00000244303 PLBD2Q8NHP8 589 aa17.09■□□□□ 0.33
HIF3A-202ENST00000244303 SEC62Q99442 399 aaKnown RBP17.09■□□□□ 0.33
HIF3A-202ENST00000244303 PDCL3Q9H2J4 239 aa17.09■□□□□ 0.33
HIF3A-202ENST00000244303 NBPF26B4DH59 902 aa17.09■□□□□ 0.33
HIF3A-202ENST00000244303 NBPF14Q5TI25 921 aa17.09■□□□□ 0.33
HIF3A-202ENST00000244303 NBPF10Q6P3W6 841 aaKnown RBP17.09■□□□□ 0.33
HIF3A-202ENST00000244303 NBPF15Q8N660 670 aa17.09■□□□□ 0.33
HIF3A-202ENST00000244303 RFX7Q2KHR2 1363 aa17.09■□□□□ 0.33
HIF3A-202ENST00000244303 NUP188Q5SRE5 1749 aa17.08■□□□□ 0.33
HIF3A-202ENST00000244303 ADCY5O95622 1261 aa17.08■□□□□ 0.33
HIF3A-202ENST00000244303 MPNDQ8N594 471 aa17.08■□□□□ 0.33
HIF3A-202ENST00000244303 ABCA3Q99758 1704 aa17.08■□□□□ 0.32
HIF3A-202ENST00000244303 TERF1P54274 439 aa17.08■□□□□ 0.32
HIF3A-202ENST00000244303 KRT32Q14532 448 aa17.08■□□□□ 0.32
HIF3A-202ENST00000244303 LMBR1LQ6UX01 489 aa17.08■□□□□ 0.32
HIF3A-202ENST00000244303 DDX46Q7L014 1031 aaKnown RBP17.08■□□□□ 0.32
HIF3A-202ENST00000244303 HAUS7Q99871 368 aa17.08■□□□□ 0.32
HIF3A-202ENST00000244303 NEK1Q96PY6 1258 aa17.07■□□□□ 0.32
HIF3A-202ENST00000244303 CHMP3Q9Y3E7 222 aa17.07■□□□□ 0.32
HIF3A-202ENST00000244303 CCDC9Q9Y3X0 531 aaKnown RBP17.07■□□□□ 0.32
HIF3A-202ENST00000244303 TJP1Q07157 1748 aa17.07■□□□□ 0.32
HIF3A-202ENST00000244303 ELP1O95163 1332 aa17.06■□□□□ 0.32
HIF3A-202ENST00000244303 KDM4AO75164 1064 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms