RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 LRRC24Q50LG9 513 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 VPS53Q5VIR6 699 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 KIF6Q6ZMV9 814 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 NOL8Q76FK4 1167 aaKnown RBP23.04■■□□□ 1.28
YBX3-201ENST00000228251 KAT6BQ8WYB5 2073 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 PALLDQ8WX93 1383 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 CSF1RP07333 972 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 CASTP20810 708 aaKnown RBP23.04■■□□□ 1.28
YBX3-201ENST00000228251 USPL1Q5W0Q7 1092 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 TICAM2Q86XR7 235 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 FBXO3Q9UK99 471 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 BRPF3Q9ULD4 1205 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 LIMCH1Q9UPQ0 1083 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 CHMP3Q9Y3E7 222 aa23.04■■□□□ 1.28
YBX3-201ENST00000228251 CDHR2Q9BYE9 1310 aa23.03■■□□□ 1.28
YBX3-201ENST00000228251 SLC27A2O14975 620 aa23.03■■□□□ 1.28
YBX3-201ENST00000228251 TAF5LO75529 589 aa23.03■■□□□ 1.28
YBX3-201ENST00000228251 ZNF594Q96JF6 807 aaPredicted RBP23.03■■□□□ 1.28
YBX3-201ENST00000228251 CDCA7Q9BWT1 371 aaPredicted RBP23.03■■□□□ 1.28
YBX3-201ENST00000228251 ISY1Q9ULR0 285 aaKnown RBP23.03■■□□□ 1.28
YBX3-201ENST00000228251 TSGA10IPQ3SY00 556 aa23.02■■□□□ 1.28
YBX3-201ENST00000228251 MCTP1Q6DN14 999 aa23.02■■□□□ 1.28
YBX3-201ENST00000228251 ZBTB38Q8NAP3 1195 aaPredicted RBP23.02■■□□□ 1.28
YBX3-201ENST00000228251 JAKMIP1Q96N16 626 aaKnown RBP23.02■■□□□ 1.28
YBX3-201ENST00000228251 GOLGA6L3A6NEY3 463 aa23.01■■□□□ 1.27
YBX3-201ENST00000228251 CPA1P15085 419 aa23.01■■□□□ 1.27
YBX3-201ENST00000228251 THRAP3Q9Y2W1 955 aaKnown RBP23.01■■□□□ 1.27
YBX3-201ENST00000228251 HLFQ16534 295 aa23.01■■□□□ 1.27
YBX3-201ENST00000228251 KBTBD3Q8NAB2 608 aa23.01■■□□□ 1.27
YBX3-201ENST00000228251 PUS3Q9BZE2 481 aaKnown RBP23.01■■□□□ 1.27
YBX3-201ENST00000228251 NLRP10Q86W26 655 aa23■■□□□ 1.27
YBX3-201ENST00000228251 ZBTB1Q9Y2K1 713 aa23■■□□□ 1.27
YBX3-201ENST00000228251 CYP46A1Q9Y6A2 500 aa23■■□□□ 1.27
YBX3-201ENST00000228251 NDUFB9Q9Y6M9 179 aa23■■□□□ 1.27
YBX3-201ENST00000228251 SLIT2O94813 1529 aa23■■□□□ 1.27
YBX3-201ENST00000228251 XRCC6P12956 609 aaKnown RBP eCLIP22.99■■□□□ 1.27
YBX3-201ENST00000228251 ZKSCAN1P17029 563 aaPredicted RBP22.99■■□□□ 1.27
YBX3-201ENST00000228251 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.99■■□□□ 1.27
YBX3-201ENST00000228251 ALDH8A1Q9H2A2 487 aaPredicted RBP22.99■■□□□ 1.27
YBX3-201ENST00000228251 SH3TC1Q8TE82 1336 aa22.99■■□□□ 1.27
YBX3-201ENST00000228251 LRP5O75197 1615 aa22.99■■□□□ 1.27
YBX3-201ENST00000228251 LARGE1O95461 756 aa22.99■■□□□ 1.27
YBX3-201ENST00000228251 TIMM10P62072 90 aa22.99■■□□□ 1.27
YBX3-201ENST00000228251 COL9A3Q14050 684 aaPredicted RBP22.99■■□□□ 1.27
YBX3-201ENST00000228251 PDRG1Q9NUG6 133 aa22.99■■□□□ 1.27
YBX3-201ENST00000228251 RIC1Q4ADV7 1423 aa22.98■■□□□ 1.27
YBX3-201ENST00000228251 LAMA4Q16363 1823 aa22.98■■□□□ 1.27
YBX3-201ENST00000228251 PRIM1P49642 420 aaKnown RBP22.98■■□□□ 1.27
YBX3-201ENST00000228251 HSP90AB3PQ58FF7 597 aa22.98■■□□□ 1.27
YBX3-201ENST00000228251 FAM89AQ96GI7 184 aa22.98■■□□□ 1.27
YBX3-201ENST00000228251 HMG20BQ9P0W2 317 aa22.98■■□□□ 1.27
YBX3-201ENST00000228251 TAF6LQ9Y6J9 622 aa22.98■■□□□ 1.27
YBX3-201ENST00000228251 A0A1B0GUL7 405 aa22.97■■□□□ 1.27
YBX3-201ENST00000228251 CHGBP05060 677 aa22.97■■□□□ 1.27
YBX3-201ENST00000228251 ST3GAL1Q11201 340 aa22.97■■□□□ 1.27
YBX3-201ENST00000228251 DNAJC2Q99543 621 aaKnown RBP22.97■■□□□ 1.27
YBX3-201ENST00000228251 ZNF330Q9Y3S2 320 aaPredicted RBP22.97■■□□□ 1.27
YBX3-201ENST00000228251 TCHHQ07283 1943 aa22.97■■□□□ 1.27
YBX3-201ENST00000228251 ERVV-1B6SEH8 477 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 IL6STP40189 918 aaPredicted RBP22.96■■□□□ 1.27
YBX3-201ENST00000228251 DDX46Q7L014 1031 aaKnown RBP22.96■■□□□ 1.27
YBX3-201ENST00000228251 CHAMP1Q96JM3 812 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 ZSCAN31Q96LW9 406 aaPredicted RBP22.96■■□□□ 1.27
YBX3-201ENST00000228251 DDX49Q9Y6V7 483 aaKnown RBP22.96■■□□□ 1.27
YBX3-201ENST00000228251 MYH14Q7Z406 1995 aaKnown RBP22.96■■□□□ 1.27
YBX3-201ENST00000228251 SPATA31A5Q5VU36 1347 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 SPATA31A7Q8IWB4 1347 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 ZNF831Q5JPB2 1677 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 CCDC57Q2TAC2 916 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 GAS2L3Q86XJ1 694 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 SH2B1Q9NRF2 756 aaPredicted RBP22.96■■□□□ 1.27
YBX3-201ENST00000228251 PAG1Q9NWQ8 432 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 MYH7P12883 1935 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 AKAP11Q9UKA4 1901 aa22.96■■□□□ 1.27
YBX3-201ENST00000228251 COL5A3P25940 1745 aaPredicted RBP22.95■■□□□ 1.26
YBX3-201ENST00000228251 RNF20Q5VTR2 975 aa22.95■■□□□ 1.26
YBX3-201ENST00000228251 SYNE4Q8N205 404 aa22.95■■□□□ 1.26
YBX3-201ENST00000228251 NEUROD6Q96NK8 337 aa22.95■■□□□ 1.26
YBX3-201ENST00000228251 PSMA5P28066 241 aa22.94■■□□□ 1.26
YBX3-201ENST00000228251 KCNJ4P48050 445 aa22.94■■□□□ 1.26
YBX3-201ENST00000228251 MRE11P49959 708 aa22.94■■□□□ 1.26
YBX3-201ENST00000228251 MCMDC2Q4G0Z9 681 aa22.94■■□□□ 1.26
YBX3-201ENST00000228251 SEC62Q99442 399 aaKnown RBP22.94■■□□□ 1.26
YBX3-201ENST00000228251 WDR33Q9C0J8 1336 aaKnown RBP22.94■■□□□ 1.26
YBX3-201ENST00000228251 LARP6Q9BRS8 491 aaKnown RBP22.94■■□□□ 1.26
YBX3-201ENST00000228251 CEP126Q9P2H0 1117 aa22.94■■□□□ 1.26
YBX3-201ENST00000228251 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.94■■□□□ 1.26
YBX3-201ENST00000228251 ARAP2Q8WZ64 1704 aa22.93■■□□□ 1.26
YBX3-201ENST00000228251 LAMB2P55268 1798 aa22.93■■□□□ 1.26
YBX3-201ENST00000228251 ADAMTS2O95450 1211 aa22.93■■□□□ 1.26
YBX3-201ENST00000228251 RPS6KB1P23443 525 aa22.93■■□□□ 1.26
YBX3-201ENST00000228251 MARCH10Q8NA82 808 aaPredicted RBP22.93■■□□□ 1.26
YBX3-201ENST00000228251 TTLL11Q8NHH1 800 aa22.93■■□□□ 1.26
YBX3-201ENST00000228251 GPT2Q8TD30 523 aa22.93■■□□□ 1.26
YBX3-201ENST00000228251 EIF5P55010 431 aaKnown RBP22.92■■□□□ 1.26
YBX3-201ENST00000228251 DDB1Q16531 1140 aa22.92■■□□□ 1.26
YBX3-201ENST00000228251 ME3Q16798 604 aa22.92■■□□□ 1.26
YBX3-201ENST00000228251 ZMYM1Q5SVZ6 1142 aa22.92■■□□□ 1.26
YBX3-201ENST00000228251 CCDC129Q6ZRS4 1044 aa22.92■■□□□ 1.26
YBX3-201ENST00000228251 BARGINQ6ZT62 677 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms