RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 SF3B3Q15393 1217 aaKnown RBP34.05■■■■□ 3.04
CHMP4B-201ENST00000217402 CCDC152Q4G0S7 254 aa34.05■■■■□ 3.04
CHMP4B-201ENST00000217402 GREM2Q9H772 168 aa34.05■■■■□ 3.04
CHMP4B-201ENST00000217402 AAMPQ13685 434 aa34.04■■■■□ 3.04
CHMP4B-201ENST00000217402 CRY2Q49AN0 593 aa34.04■■■■□ 3.04
CHMP4B-201ENST00000217402 PCDHB15Q9Y5E8 787 aa34.04■■■■□ 3.04
CHMP4B-201ENST00000217402 KLRG2A4D1S0 409 aaPredicted RBP34.03■■■■□ 3.04
CHMP4B-201ENST00000217402 C2CD5Q86YS7 1000 aa34.03■■■■□ 3.04
CHMP4B-201ENST00000217402 RPGRQ92834 1020 aaKnown RBP34.03■■■■□ 3.04
CHMP4B-201ENST00000217402 COL11A2P13942 1736 aaPredicted RBP34.02■■■■□ 3.04
CHMP4B-201ENST00000217402 SRGAP3O43295 1099 aa34.02■■■■□ 3.04
CHMP4B-201ENST00000217402 CHRNA5P30532 468 aa34.02■■■■□ 3.04
CHMP4B-201ENST00000217402 KIF13BQ9NQT8 1826 aa34.02■■■■□ 3.04
CHMP4B-201ENST00000217402 PNMA6EA0A0J9YXQ4 647 aa34.01■■■■□ 3.04
CHMP4B-201ENST00000217402 MTX1Q13505 466 aa34.01■■■■□ 3.03
CHMP4B-201ENST00000217402 SEC31BQ9NQW1 1179 aa34.01■■■■□ 3.03
CHMP4B-201ENST00000217402 ITGA6P23229 1130 aa34■■■■□ 3.03
CHMP4B-201ENST00000217402 ATP8B2P98198 1209 aa34■■■■□ 3.03
CHMP4B-201ENST00000217402 H0YIN7 160 aa33.99■■■■□ 3.03
CHMP4B-201ENST00000217402 SRGNP10124 158 aa33.99■■■■□ 3.03
CHMP4B-201ENST00000217402 RPAP2Q8IXW5 612 aaPredicted RBP33.99■■■■□ 3.03
CHMP4B-201ENST00000217402 CD2APQ9Y5K6 639 aa33.99■■■■□ 3.03
CHMP4B-201ENST00000217402 IFIT5Q13325 482 aaKnown RBP33.98■■■■□ 3.03
CHMP4B-201ENST00000217402 CCDC57Q2TAC2 916 aa33.98■■■■□ 3.03
CHMP4B-201ENST00000217402 SIRT2Q8IXJ6 389 aa33.98■■■■□ 3.03
CHMP4B-201ENST00000217402 RTL9Q8NET4 1388 aa33.98■■■■□ 3.03
CHMP4B-201ENST00000217402 DDX46Q7L014 1031 aaKnown RBP33.97■■■■□ 3.03
CHMP4B-201ENST00000217402 A0A0G2JLW4 131 aa33.96■■■■□ 3.03
CHMP4B-201ENST00000217402 ANKRD18BA2A2Z9 1011 aa33.96■■■■□ 3.03
CHMP4B-201ENST00000217402 NPR1P16066 1061 aa33.96■■■■□ 3.03
CHMP4B-201ENST00000217402 ZNF622Q969S3 477 aaKnown RBP eCLIP33.96■■■■□ 3.034e-8■■■□□ 15.5
CHMP4B-201ENST00000217402 RBM17Q96I25 401 aaKnown RBP33.96■■■■□ 3.03
CHMP4B-201ENST00000217402 COL4A1P02462 1669 aa33.95■■■■□ 3.03
CHMP4B-201ENST00000217402 DPEP1P16444 411 aa33.95■■■■□ 3.03
CHMP4B-201ENST00000217402 KLHDC4Q8TBB5 520 aa33.95■■■■□ 3.03
CHMP4B-201ENST00000217402 MASTLQ96GX5 879 aa33.95■■■■□ 3.03
CHMP4B-201ENST00000217402 FHDC1Q9C0D6 1143 aaPredicted RBP33.95■■■■□ 3.03
CHMP4B-201ENST00000217402 PDZRN3Q9UPQ7 1066 aa33.95■■■■□ 3.03
CHMP4B-201ENST00000217402 ZNF594Q96JF6 807 aaPredicted RBP33.94■■■■□ 3.02
CHMP4B-201ENST00000217402 HOXA10P31260 410 aaPredicted RBP33.93■■■■□ 3.02
CHMP4B-201ENST00000217402 RFX5P48382 616 aaPredicted RBP33.93■■■■□ 3.02
CHMP4B-201ENST00000217402 TGFB2P61812 414 aa33.93■■■■□ 3.02
CHMP4B-201ENST00000217402 TAF7LQ5H9L4 462 aa33.93■■■■□ 3.02
CHMP4B-201ENST00000217402 SSH3Q8TE77 659 aa33.93■■■■□ 3.02
CHMP4B-201ENST00000217402 KIAA1551Q9HCM1 1747 aa33.93■■■■□ 3.02
CHMP4B-201ENST00000217402 POLA2Q14181 598 aa33.93■■■■□ 3.02
CHMP4B-201ENST00000217402 CELF1Q92879 486 aaKnown RBP33.93■■■■□ 3.02
CHMP4B-201ENST00000217402 LRP5O75197 1615 aa33.92■■■■□ 3.02
CHMP4B-201ENST00000217402 HMMRO75330 724 aa33.92■■■■□ 3.02
CHMP4B-201ENST00000217402 CDC5LQ99459 802 aaKnown RBP33.92■■■■□ 3.02
CHMP4B-201ENST00000217402 PA2G4Q9UQ80 394 aaKnown RBP33.92■■■■□ 3.02
CHMP4B-201ENST00000217402 TAF1P21675 1872 aa33.92■■■■□ 3.02
CHMP4B-201ENST00000217402 STYK1Q6J9G0 422 aa33.91■■■■□ 3.02
CHMP4B-201ENST00000217402 NLGN2Q8NFZ4 835 aa33.91■■■■□ 3.02
CHMP4B-201ENST00000217402 SRCAPQ6ZRS2 3230 aa33.91■■■■□ 3.02
CHMP4B-201ENST00000217402 GRAPQ13588 217 aa33.9■■■■□ 3.02
CHMP4B-201ENST00000217402 GRAPLQ8TC17 118 aaPredicted RBP33.9■■■■□ 3.02
CHMP4B-201ENST00000217402 CRAMP1Q96RY5 1269 aa33.9■■■■□ 3.02
CHMP4B-201ENST00000217402 DLEC1Q9Y238 1755 aa33.89■■■■□ 3.02
CHMP4B-201ENST00000217402 PTPN12Q05209 780 aaKnown RBP33.89■■■■□ 3.02
CHMP4B-201ENST00000217402 ANKRD18AQ8IVF6 992 aa33.89■■■■□ 3.02
CHMP4B-201ENST00000217402 SIL1Q9H173 461 aa33.89■■■■□ 3.02
CHMP4B-201ENST00000217402 KCNA3P22001 575 aa33.88■■■■□ 3.01
CHMP4B-201ENST00000217402 ERICH6BQ5W0A0 696 aa33.88■■■■□ 3.01
CHMP4B-201ENST00000217402 WWC3Q9ULE0 1092 aa33.88■■■■□ 3.01
CHMP4B-201ENST00000217402 IGHMBP2P38935 993 aaKnown RBP33.87■■■■□ 3.01
CHMP4B-201ENST00000217402 ALDH1B1P30837 517 aa33.86■■■■□ 3.01
CHMP4B-201ENST00000217402 RPS8P62241 208 aaKnown RBP33.86■■■■□ 3.01
CHMP4B-201ENST00000217402 SPEF2Q9C093 1822 aa33.86■■■■□ 3.01
CHMP4B-201ENST00000217402 MPHOSPH8Q99549 860 aa33.86■■■■□ 3.01
CHMP4B-201ENST00000217402 COPRSQ9NQ92 184 aa33.86■■■■□ 3.01
CHMP4B-201ENST00000217402 CNKSR1Q969H4 720 aa33.85■■■■□ 3.01
CHMP4B-201ENST00000217402 HDAC1Q13547 482 aaPredicted RBP33.84■■■■□ 3.01
CHMP4B-201ENST00000217402 LDHAL6AQ6ZMR3 332 aa33.84■■■■□ 3.01
CHMP4B-201ENST00000217402 SYT17Q9BSW7 474 aa33.84■■■■□ 3.01
CHMP4B-201ENST00000217402 PUS3Q9BZE2 481 aaKnown RBP33.84■■■■□ 3.01
CHMP4B-201ENST00000217402 SURF6O75683 361 aaKnown RBP33.83■■■■□ 3.01
CHMP4B-201ENST00000217402 PRPF40BQ6NWY9 871 aaKnown RBP33.83■■■■□ 3.01
CHMP4B-201ENST00000217402 SLC51AQ86UW1 340 aa33.83■■■■□ 3.01
CHMP4B-201ENST00000217402 EXOC6BQ9Y2D4 811 aa33.83■■■■□ 3.01
CHMP4B-201ENST00000217402 CACNA1SQ13698 1873 aa33.83■■■■□ 3.01
CHMP4B-201ENST00000217402 PPEF1O14829 653 aaPredicted RBP33.82■■■■□ 3.01
CHMP4B-201ENST00000217402 RWDD1Q9H446 243 aaPredicted RBP33.82■■■■□ 3.01
CHMP4B-201ENST00000217402 CNNM1Q9NRU3 951 aa33.82■■■■□ 3.01
CHMP4B-201ENST00000217402 PIM2Q9P1W9 311 aa33.82■■■■□ 3.01
CHMP4B-201ENST00000217402 IGHDP01880 384 aa33.82■■■■□ 3
CHMP4B-201ENST00000217402 LRRC24Q50LG9 513 aa33.82■■■■□ 3
CHMP4B-201ENST00000217402 TTLL6Q8N841 843 aa33.82■■■■□ 3
CHMP4B-201ENST00000217402 BBOX1O75936 387 aa33.81■■■■□ 3
CHMP4B-201ENST00000217402 EYA2O00167 538 aa33.8■■■■□ 3
CHMP4B-201ENST00000217402 OS9Q13438 667 aaPredicted RBP33.8■■■■□ 3
CHMP4B-201ENST00000217402 BSDC1Q9NW68 430 aaPredicted RBP33.8■■■■□ 3
CHMP4B-201ENST00000217402 ZNF219Q9P2Y4 722 aaPredicted RBP33.79■■■■□ 3
CHMP4B-201ENST00000217402 CCDC136Q96JN2 1154 aa33.79■■■■□ 3
CHMP4B-201ENST00000217402 PPP4R2Q9NY27 417 aa33.79■■■■□ 3
CHMP4B-201ENST00000217402 SLX4Q8IY92 1834 aa33.78■■■■□ 3
CHMP4B-201ENST00000217402 G3BP1Q13283 466 aaKnown RBP eCLIP33.78■■■■□ 3
CHMP4B-201ENST00000217402 NOP58Q9Y2X3 529 aaKnown RBP33.78■■■■□ 3
CHMP4B-201ENST00000217402 APBB1O00213 710 aa33.77■■■■□ 3
CHMP4B-201ENST00000217402 ATG9AQ7Z3C6 839 aa33.77■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms