RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 FTOQ9C0B1 505 aaKnown RBP eCLIP16.62■□□□□ 0.25
USH1C-201ENST00000005226 IGKV5-2P06315 115 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 U2AF2P26368 475 aaKnown RBP eCLIP16.61■□□□□ 0.25
USH1C-201ENST00000005226 CHAF1AQ13111 956 aaPredicted RBP16.61■□□□□ 0.25
USH1C-201ENST00000005226 C1orf141Q5JVX7 400 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 BRF1Q92994 677 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 PDCP20941 246 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 ARID5BQ14865 1188 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 PDCL2Q8N4E4 241 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 LINS1Q8NG48 757 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 CRYBG1Q9Y4K1 1723 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 IGSF3O75054 1194 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 TAF5LO75529 589 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 HSP90B1P14625 803 aaKnown RBP16.61■□□□□ 0.25
USH1C-201ENST00000005226 ZSCAN20P17040 1043 aaPredicted RBP16.61■□□□□ 0.25
USH1C-201ENST00000005226 ZNF75DP51815 510 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 CCDC144BQ3MJ40 725 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 RNF20Q5VTR2 975 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 RIC3Q7Z5B4 369 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 CCDC144CPQ8IYA2 1237 aa16.61■□□□□ 0.25
USH1C-201ENST00000005226 COL15A1P39059 1388 aa16.6■□□□□ 0.25
USH1C-201ENST00000005226 ZNF165P49910 485 aa16.6■□□□□ 0.25
USH1C-201ENST00000005226 PSME1Q06323 249 aa16.6■□□□□ 0.25
USH1C-201ENST00000005226 FBXW7Q969H0 707 aa16.6■□□□□ 0.25
USH1C-201ENST00000005226 SCAND2PQ9GZW5 306 aaPredicted RBP16.6■□□□□ 0.25
USH1C-201ENST00000005226 CLSTN2Q9H4D0 955 aa16.6■□□□□ 0.25
USH1C-201ENST00000005226 ELP1O95163 1332 aa16.6■□□□□ 0.25
USH1C-201ENST00000005226 MARF1Q9Y4F3 1742 aaKnown RBP16.6■□□□□ 0.25
USH1C-201ENST00000005226 ESCO1Q5FWF5 840 aa16.6■□□□□ 0.25
USH1C-201ENST00000005226 Q6ZUG5 572 aa16.6■□□□□ 0.25
USH1C-201ENST00000005226 ERCC4Q92889 916 aaPredicted RBP16.6■□□□□ 0.25
USH1C-201ENST00000005226 PXDNQ92626 1479 aa16.59■□□□□ 0.25
USH1C-201ENST00000005226 TPM3P06753 285 aa16.59■□□□□ 0.25
USH1C-201ENST00000005226 ZSCAN25Q6NSZ9 544 aa16.59■□□□□ 0.25
USH1C-201ENST00000005226 CACTINQ8WUQ7 758 aaKnown RBP16.59■□□□□ 0.25
USH1C-201ENST00000005226 DNAJC2Q99543 621 aaKnown RBP16.59■□□□□ 0.25
USH1C-201ENST00000005226 HIP1O00291 1037 aa16.59■□□□□ 0.25
USH1C-201ENST00000005226 NPHP3Q7Z494 1330 aa16.58■□□□□ 0.25
USH1C-201ENST00000005226 PDIA6Q15084 440 aa16.58■□□□□ 0.25
USH1C-201ENST00000005226 ANKRD1Q15327 319 aa16.58■□□□□ 0.25
USH1C-201ENST00000005226 H3BQV1 296 aa16.58■□□□□ 0.24
USH1C-201ENST00000005226 IFFO2Q5TF58 517 aa16.58■□□□□ 0.24
USH1C-201ENST00000005226 ZNF592Q92610 1267 aa16.58■□□□□ 0.24
USH1C-201ENST00000005226 MYD88Q99836 296 aa16.58■□□□□ 0.24
USH1C-201ENST00000005226 MED23Q9ULK4 1368 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 TFCP2Q12800 502 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 RESTQ13127 1097 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 PLA2G4DQ86XP0 818 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 CLIP2Q9UDT6 1046 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 DBNLQ9UJU6 430 aaKnown RBP16.57■□□□□ 0.24
USH1C-201ENST00000005226 USP16Q9Y5T5 823 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 RGPD2P0DJD1 1756 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 TNNT1P13805 278 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 C11orf57Q6ZUT1 292 aaPredicted RBP16.57■□□□□ 0.24
USH1C-201ENST00000005226 NEK1Q96PY6 1258 aa16.57■□□□□ 0.24
USH1C-201ENST00000005226 DDX19AQ9NUU7 478 aaKnown RBP16.57■□□□□ 0.24
USH1C-201ENST00000005226 A0A0G2JLW4 131 aa16.56■□□□□ 0.24
USH1C-201ENST00000005226 DDX46Q7L014 1031 aaKnown RBP16.56■□□□□ 0.24
USH1C-201ENST00000005226 XAGE3Q8WTP9 111 aa16.56■□□□□ 0.24
USH1C-201ENST00000005226 GTF3C6Q969F1 213 aa16.56■□□□□ 0.24
USH1C-201ENST00000005226 GUCY1B3Q02153 619 aa16.56■□□□□ 0.24
USH1C-201ENST00000005226 COPS6Q7L5N1 327 aa16.56■□□□□ 0.24
USH1C-201ENST00000005226 SNRKQ9NRH2 765 aa16.56■□□□□ 0.24
USH1C-201ENST00000005226 NAP1L2Q9ULW6 460 aaPredicted RBP16.56■□□□□ 0.24
USH1C-201ENST00000005226 AXIN2Q9Y2T1 843 aa16.56■□□□□ 0.24
USH1C-201ENST00000005226 CYP21A2P08686 494 aa16.55■□□□□ 0.24
USH1C-201ENST00000005226 FGD1P98174 961 aa16.55■□□□□ 0.24
USH1C-201ENST00000005226 SCRN1Q12765 414 aa16.55■□□□□ 0.24
USH1C-201ENST00000005226 TDRD7Q8NHU6 1098 aaKnown RBP16.55■□□□□ 0.24
USH1C-201ENST00000005226 CHMP4AQ9BY43 222 aa16.55■□□□□ 0.24
USH1C-201ENST00000005226 DDX21Q9NR30 783 aaKnown RBP eCLIP16.55■□□□□ 0.24
USH1C-201ENST00000005226 CCT2P78371 535 aaKnown RBP16.55■□□□□ 0.24
USH1C-201ENST00000005226 THEMISQ8N1K5 641 aaPredicted RBP16.55■□□□□ 0.24
USH1C-201ENST00000005226 ANKRD24Q8TF21 1146 aa16.55■□□□□ 0.24
USH1C-201ENST00000005226 ANKRD7Q92527 254 aa16.55■□□□□ 0.24
USH1C-201ENST00000005226 DBNDD2Q9BQY9 259 aa16.55■□□□□ 0.24
USH1C-201ENST00000005226 KDM3BQ7LBC6 1761 aa16.55■□□□□ 0.24
USH1C-201ENST00000005226 USP27XA6NNY8 438 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 NEURL1BA8MQ27 555 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 CTIFO43310 598 aaKnown RBP16.54■□□□□ 0.24
USH1C-201ENST00000005226 DDX58O95786 925 aaKnown RBP16.54■□□□□ 0.24
USH1C-201ENST00000005226 DMTNQ08495 405 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 NCBP1Q09161 790 aaKnown RBP16.54■□□□□ 0.24
USH1C-201ENST00000005226 MED1Q15648 1581 aaPredicted RBP16.54■□□□□ 0.24
USH1C-201ENST00000005226 TPD52L1Q16890 204 aaPredicted RBP16.54■□□□□ 0.24
USH1C-201ENST00000005226 RBM43Q6ZSC3 357 aaKnown RBP16.54■□□□□ 0.24
USH1C-201ENST00000005226 STOX1Q6ZVD7 989 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 ATP5J2-PTCD1G3V325 749 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 PTCD1O75127 700 aaKnown RBP16.54■□□□□ 0.24
USH1C-201ENST00000005226 GCKRQ14397 625 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 CHST3Q7LGC8 479 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 GOLPH3LQ9H4A5 285 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 LTN1O94822 1766 aa16.54■□□□□ 0.24
USH1C-201ENST00000005226 NCOA5Q9HCD5 579 aaKnown RBP16.54■□□□□ 0.24
USH1C-201ENST00000005226 GCP02774 474 aa16.53■□□□□ 0.24
USH1C-201ENST00000005226 APOBRQ0VD83 1088 aa16.53■□□□□ 0.24
USH1C-201ENST00000005226 AMOTQ4VCS5 1084 aa16.53■□□□□ 0.24
USH1C-201ENST00000005226 CCAR1Q8IX12 1150 aaKnown RBP16.53■□□□□ 0.24
USH1C-201ENST00000005226 HDAC5Q9UQL6 1122 aa16.53■□□□□ 0.24
USH1C-201ENST00000005226 UTYO14607 1347 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms