RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 STARD6P59095 220 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 NTHL1P78549 312 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 HSF2Q03933 536 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 CHRNB3Q05901 458 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 ADPRMQ3LIE5 342 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 LRRC23Q53EV4 343 aaPredicted RBP1.88□□□□□ -2.11
CD44-239ENST00000639002 ZNF311Q5JNZ3 666 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 CTRB2Q6GPI1 263 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 LRRC8BQ6P9F7 803 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 RUFY3Q7L099 469 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 EFCAB13Q8IY85 973 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 MYOCDQ8IZQ8 938 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 SVOPLQ8N434 492 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 CNNM3Q8NE01 707 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 SHC3Q92529 594 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 NDRG1Q92597 394 aaKnown RBP1.88□□□□□ -2.11
CD44-239ENST00000639002 HPDLQ96IR7 371 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 VSTM2LQ96N03 204 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 TCHPQ9BT92 498 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 ACTR8Q9H981 624 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 CGNQ9P2M7 1197 aaKnown RBP1.88□□□□□ -2.11
CD44-239ENST00000639002 ATXN10Q9UBB4 475 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 EXTL2Q9UBQ6 330 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 GNPTGQ9UJJ9 305 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 TRAPPC4Q9Y296 219 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 AP4B1Q9Y6B7 739 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 FRMPD3Q5JV73 1810 aa1.88□□□□□ -2.11
CD44-239ENST00000639002 CARMIL1Q5VZK9 1371 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 IGHV3OR16-13A0A075B7E8 117 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 KIR2DS1A0A191URI9 304 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 H0YCG3 227 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 K7EPI3 171 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 UBXN8O00124 270 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 SGK1O00141 431 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 DUX1O43812 170 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 GMFGO60234 142 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 B4GALT2O60909 372 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 IDH1O75874 414 aaKnown RBP1.87□□□□□ -2.11
CD44-239ENST00000639002 LGI1O95970 557 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 IFNB1P01574 187 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 CLUP10909 449 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 ICAM2P13598 275 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 CALB2P22676 271 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 CYLC1P35663 651 aaPredicted RBP1.87□□□□□ -2.11
CD44-239ENST00000639002 RABIFP47224 123 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 TAS2R19P59542 299 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 ACTA2P62736 377 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 ACTC1P68032 377 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 SCGB2A2Q13296 93 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 KIR2DS1Q14954 304 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 NCAPD2Q15021 1401 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 TRIP10Q15642 601 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 CEBPEQ15744 281 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 CEP55Q53EZ4 464 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 HSP90AB3PQ58FF7 597 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 TMEM255AQ5JRV8 349 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 LY6G6FQ5SQ64 297 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 C1orf100Q5SVJ3 147 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 C12orf60Q5U649 245 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 ISLR2Q6UXK2 745 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 BCORP1Q8N888 145 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 Q8N976 141 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 MINDY2Q8NBR6 621 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 GMCL1P1Q8NEA9 526 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 IPMKQ8NFU5 416 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 BRSK1Q8TDC3 778 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 THRSPQ92748 146 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 VPS35Q96QK1 796 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 GAL3ST1Q99999 423 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 CRACR2AQ9BSW2 395 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 CRNKL1Q9BZJ0 848 aaKnown RBP1.87□□□□□ -2.11
CD44-239ENST00000639002 GPR61Q9BZJ8 451 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 HSD3B7Q9H2F3 369 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 RIBC2Q9H4K1 309 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 SLC35D1Q9NTN3 355 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.87□□□□□ -2.11
CD44-239ENST00000639002 MRPL39Q9NYK5 338 aaKnown RBP1.87□□□□□ -2.11
CD44-239ENST00000639002 SLC25A37Q9NYZ2 338 aa1.87□□□□□ -2.11
CD44-239ENST00000639002 WARS2Q9UGM6 360 aaKnown RBP1.87□□□□□ -2.11
CD44-239ENST00000639002 YTHDF2Q9Y5A9 579 aaKnown RBP1.87□□□□□ -2.11
CD44-239ENST00000639002 DDX49Q9Y6V7 483 aaKnown RBP1.87□□□□□ -2.11
CD44-239ENST00000639002 E9PBE3 544 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 KIF2AO00139 706 aaPredicted RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 AP3B1O00203 1094 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 CASQ2O14958 399 aaPredicted RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 JAK2O60674 1132 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 GNA14O95837 355 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 RHOXF2BP0C7M4 288 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 TSPY4P0CV99 314 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 TSPY10P0CW01 314 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 CALCBP10092 127 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 RNASE2P10153 161 aaKnown RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 CD80P33681 288 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 ACAA2P42765 397 aaKnown RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 KLK7P49862 253 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 BIDP55957 195 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 PDZK1IP1Q13113 114 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 SNTB2Q13425 540 aaKnown RBP1.86□□□□□ -2.11
CD44-239ENST00000639002 RIPK1Q13546 671 aa1.86□□□□□ -2.11
CD44-239ENST00000639002 CCDC183Q5T5S1 534 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms