RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 TSC22D1Q15714 1073 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 DEFB113Q30KQ7 82 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 STK32CQ86UX6 486 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 COMTD1Q86VU5 262 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 CXorf67Q86X51 503 aaPredicted RBP9.16□□□□□ -0.94
SHMT2-224ENST00000556737 KRTAP1-3Q8IUG1 177 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 PEX5LQ8IYB4 626 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 PGAM4Q8N0Y7 254 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 MAL2Q969L2 176 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 DNAJA3Q96EY1 480 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 ADAM19Q9H013 955 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 OR10A4Q9H209 315 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 C1orf21Q9H246 121 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 BCL2L10Q9HD36 194 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 VAPAQ9P0L0 249 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 PRSS50Q9UI38 385 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 GPR52Q9Y2T5 361 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 TMED7Q9Y3B3 224 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 HDGFL3Q9Y3E1 203 aa9.16□□□□□ -0.94
SHMT2-224ENST00000556737 SPIN1Q9Y657 262 aaPredicted RBP9.16□□□□□ -0.94
SHMT2-224ENST00000556737 A0A0G2JPF8 293 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 ZC3H12DA2A288 527 aaKnown RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 HNRNPCL2B2RXH8 293 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 HNRNPCL3B7ZW38 293 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 GSC2O15499 205 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 ZNF208O43345 1280 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 PDE5AO76074 875 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 GKN3PP0CG01 181 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 HNRNPCL4P0DMR1 293 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 ARAFP10398 606 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 TFPIP10646 304 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 PRG2P13727 222 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 NQO1P15559 274 aaKnown RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 COX5AP20674 150 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 NTF4P34130 210 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 SLC1A3P43003 542 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 HTR3AP46098 478 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 CLK1P49759 484 aaKnown RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 SLC7A2P52569 658 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 SLC16A1P53985 500 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 CSNK2A1P68400 391 aaPredicted RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 H3F3AP84243 136 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 DMTNQ08495 405 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 FADDQ13158 208 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 PDK3Q15120 406 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 PRAMEF8Q5VWM4 474 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 PRAMEF7Q5VXH5 474 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 HACD2Q6Y1H2 254 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 ZNF440Q8IYI8 595 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 CLIP4Q8N3C7 705 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 S100PBPQ96BU1 408 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 LRRC58Q96CX6 371 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 CDRT15Q96T59 188 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 HOPXQ9BPY8 73 aaPredicted RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 CPPED1Q9BRF8 314 aaPredicted RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 SPATA9Q9BWV2 254 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 CADM1Q9BY67 442 aaKnown RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 SPAG4Q9NPE6 437 aa9.15□□□□□ -0.94
SHMT2-224ENST00000556737 THUMPD1Q9NXG2 353 aaKnown RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 RRP15Q9Y3B9 282 aaKnown RBP9.15□□□□□ -0.94
SHMT2-224ENST00000556737 MED13LQ71F56 2210 aa9.15□□□□□ -0.95
SHMT2-224ENST00000556737 TMEM229AB2RXF0 380 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 PGM3O95394 542 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 STAMBPO95630 424 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 ADAP00813 363 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 TCN1P20061 433 aaPredicted RBP9.14□□□□□ -0.95
SHMT2-224ENST00000556737 CCNA2P20248 432 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 FKBP2P26885 142 aaKnown RBP9.14□□□□□ -0.95
SHMT2-224ENST00000556737 MTPNP58546 118 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 KEAP1Q14145 624 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 BEX5Q5H9J7 111 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 SFRP5Q5T4F7 317 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 DLEU7Q6UYE1 221 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 Q6ZT83 130 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 ASRGL1Q7L266 308 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 ARPINQ7Z6K5 226 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 ATG4DQ86TL0 474 aaPredicted RBP9.14□□□□□ -0.95
SHMT2-224ENST00000556737 SERPINA11Q86U17 422 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 DPP10Q8N608 796 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 RNF148Q8N7C7 305 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 STEAP2Q8NFT2 490 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 NFKBIDQ8NI38 313 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 BBS10Q8TAM1 723 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 PIGXQ8TBF5 258 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 IGFBPL1Q8WX77 278 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 C3orf49Q96BT1 292 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 ZNF775Q96BV0 537 aaPredicted RBP9.14□□□□□ -0.95
SHMT2-224ENST00000556737 CCDC124Q96CT7 223 aaKnown RBP9.14□□□□□ -0.95
SHMT2-224ENST00000556737 CLPTM1LQ96KA5 538 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 CGREF1Q99674 301 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 TMEM204Q9BSN7 226 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 TMUB1Q9BVT8 246 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 RAD21L1Q9H4I0 556 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 TMEM181Q9P2C4 612 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 PRPF19Q9UMS4 504 aaKnown RBP9.14□□□□□ -0.95
SHMT2-224ENST00000556737 PRR14LQ5THK1 2151 aa9.14□□□□□ -0.95
SHMT2-224ENST00000556737 FLNAP21333 2647 aaKnown RBP9.14□□□□□ -0.95
SHMT2-224ENST00000556737 LIPT2A6NK58 231 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms