RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 RANBP3LQ86VV4 465 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 ZNF440Q8IYI8 595 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 DTNBP1Q96EV8 351 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 PIK3IP1Q96FE7 263 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 SH3YL1Q96HL8 342 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 JSRP1Q96MG2 331 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 UBQLN3Q9H347 655 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 EVA1AQ9H8M9 152 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 CNOT11Q9UKZ1 510 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 CAMK2AQ9UQM7 478 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 FAM32AQ9Y421 112 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 WIF1Q9Y5W5 379 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 CHCHD2Q9Y6H1 151 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 PRR14LQ5THK1 2151 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 MGAM2Q2M2H8 2515 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 CENPVL1A0A0U1RR11 272 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 TCRBV5S2A0A599 114 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 TCRBV3S1A0A5B6 114 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 CLDN24A6NM45 220 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 NPIPB9F8W1W9 429 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 HAX1O00165 279 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 AP3D1O14617 1153 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 HCRTR2O43614 444 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 GMFGO60234 142 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 FADS1O60427 444 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 TPST1O60507 370 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 FKBP6O75344 327 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 ENTPD5O75356 428 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 RCBTB2O95199 551 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 FABP3P05413 133 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 HPNP05981 417 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 ITGA2P17301 1181 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 CD247P20963 164 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 PCYT1AP49585 367 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 EEF1A1P68104 462 aaKnown RBP11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 C17orf67Q0P5P2 114 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 SNTA1Q13424 505 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 GLIPR1L2Q4G1C9 344 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 KLHL26Q53HC5 615 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 ZFP1Q6P2D0 407 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 DEF8Q6ZN54 512 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 PACS2Q86VP3 889 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 CYP4Z1Q86W10 505 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 CARM1Q86X55 608 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 TOR1AIP2Q8NFQ8 470 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 OR4K17Q8NGC6 315 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 ZPLD1Q8TCW7 415 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 CANT1Q8WVQ1 401 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 SFXN3Q9BWM7 321 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 MAGIXQ9H6Y5 334 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 GALNT9Q9HCQ5 603 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 RLIMQ9NVW2 624 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 KCNE5Q9UJ90 142 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 SLC6A5Q9Y345 797 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 PCNX3Q9H6A9 2034 aa11.19□□□□□ -0.62
CLSTN3-208ENST00000538933 CDHR4A6H8M9 788 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 C2orf72A6NCS6 295 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 M0R3H8 397 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 GNGT2O14610 69 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 EIF4E2O60573 245 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 SNX4O95219 450 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 LGI1O95970 557 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 FAM157CP0CG43 387 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 RAP2AP10114 183 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 TNFRSF1BP20333 461 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 GDF1P27539 372 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 RYKP34925 604 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 CASP3P42574 277 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 OR1E2P47887 323 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 CRYBA2P53672 197 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 COPZ1P61923 177 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 ELF3P78545 371 aaPredicted RBP11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 FAM27E3Q08E93 113 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 CHRFAM7AQ494W8 412 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 FNDC7Q5VTL7 733 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 BICRALQ6AI39 1079 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 C22orf34Q6ZV56 151 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 PLEKHM3Q6ZWE6 761 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 ADGRE4PQ86SQ3 457 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 ZDHHC21Q8IVQ6 265 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 CLIP4Q8N3C7 705 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 FAM86B1Q8N7N1 296 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 GPR32P1Q8NGA4 272 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 B4GALNT2Q8NHY0 566 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 ZNF563Q8TA94 476 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 RNF217Q8TC41 542 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 PYDC1Q8WXC3 89 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 CNOT9Q92600 299 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 ZNF597Q96LX8 424 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 C19orf24Q9BVV8 132 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 REG4Q9BYZ8 158 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 PTGES2Q9H7Z7 377 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 YAE1D1Q9NRH1 226 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 SELENONQ9NZV5 590 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 RPS6KB2Q9UBS0 482 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 CARD8Q9Y2G2 431 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 AP4S1Q9Y587 144 aa11.18□□□□□ -0.62
CLSTN3-208ENST00000538933 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.17□□□□□ -0.62
CLSTN3-208ENST00000538933 ANKRD33BA6NCL7 494 aa11.17□□□□□ -0.62
CLSTN3-208ENST00000538933 hCG_2039718K7EN88 272 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms