RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	PDLIM1	O00151	329 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	EIF4E2	O60573	245 aa	Known RBP	10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	MRPL33	O75394	65 aa	Known RBP	10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	H6PD	O95479	791 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	WNT11	O96014	354 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	IGHV3-9	P01782	118 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	ITGA5	P08648	1049 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	UBL4A	P11441	157 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	DDX5	P17844	614 aa	Known RBP	10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	APEX1	P27695	318 aa	Known RBP	10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	EPHA3	P29320	983 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	SLC16A1	P53985	500 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	DVL1P1	P54792	670 aa	Predicted RBP	10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	CDH15	P55291	814 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	KLF10	Q13118	480 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	RIPK1	Q13546	671 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	TOMM34	Q15785	309 aa	Predicted RBP	10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	SYT14P1	Q58G82	188 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	CCNJ	Q5T5M9	372 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	NOXRED1	Q6NXP6	359 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	KLHL24	Q6TFL4	600 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	TMPPE	Q6ZT21	453 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	TRIM46	Q7Z4K8	759 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	JADE3	Q92613	823 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	KCNA7	Q96RP8	456 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	PIGU	Q9H490	435 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	WDR55	Q9H6Y2	383 aa	Predicted RBP	10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	TNFRSF12A	Q9NP84	129 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	SLC17A5	Q9NRA2	495 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	TIMM22	Q9Y584	194 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	DNAJC15	Q9Y5T4	150 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	CAD	P27708	2225 aa		10.86	□□□□□ -0.67
CAPN1-223	ENST00000533079	TMEM89	A2RUT3	159 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079		C9JVG2	144 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079		H0YHG0	523 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	GTPBP1	O00178	669 aa	Known RBP	10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	SULT2B1	O00204	365 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	GSC2	O15499	205 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	ZNF264	O43296	627 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	VENTX	O95231	258 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	PMS2P2	O95744	297 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	CHEK2	O96017	543 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	KRT16	P08779	473 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	NCF2	P19878	526 aa	Predicted RBP	10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	PRPH2	P23942	346 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	SERPINF1	P36955	418 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	ATP12A	P54707	1039 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	QPRT	Q15274	297 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	EFNB3	Q15768	340 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	SMU1	Q2TAY7	513 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	PRR31	Q5SQ13	230 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	OGFOD2	Q6N063	350 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	TMCO5A	Q8N6Q1	288 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	WDR31	Q8NA23	367 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	RP9	Q8TA86	221 aa	Known RBP	10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	ZNF418	Q8TF45	676 aa	Predicted RBP	10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	FAM216A	Q8WUB2	273 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	TMEM234	Q8WY98	164 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	CIDEC	Q96AQ7	238 aa	Predicted RBP	10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	ZNF775	Q96BV0	537 aa	Predicted RBP	10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	PPCDC	Q96CD2	204 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	BOD1	Q96IK1	185 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	VRK1	Q99986	396 aa	Predicted RBP	10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	KATNB1	Q9BVA0	655 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	RAB1B	Q9H0U4	201 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	OCEL1	Q9H607	264 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	MOV10	Q9HCE1	1003 aa	Known RBP	10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	OBP2B	Q9NPH6	170 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	CA10	Q9NS85	328 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	TAS2R1	Q9NYW7	299 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	ARMCX1	Q9P291	453 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	DTNA	Q9Y4J8	743 aa		10.85	□□□□□ -0.67
CAPN1-223	ENST00000533079	PLCE1	Q9P212	2302 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	LRP5L	A4QPB2	252 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079		B2RBV5	119 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	TMEM233	B4DJY2	109 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	NPIPB8	E9PQR5	432 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	OIP5	O43482	229 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	DNAJA2	O60884	412 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	STAMBP	O95630	424 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	HMGN2	P05204	90 aa	Known RBP	10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	FKBP2	P26885	142 aa	Known RBP	10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	KHK	P50053	298 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	IDH3G	P51553	393 aa	Predicted RBP	10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	CCR4	P51679	360 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	PRPS1	P60891	318 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	PDE7A	Q13946	482 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	PDCD2	Q16342	344 aa	Predicted RBP	10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	DNAL1	Q4LDG9	190 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	TIGD2	Q4W5G0	525 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	DCST2	Q5T1A1	773 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	CDC73	Q6P1J9	531 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	RINL	Q6ZS11	566 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	USP43	Q70EL4	1123 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	SPATA19	Q7Z5L4	167 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	TEX29	Q8N6K0	151 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	AGR3	Q8TD06	166 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	TWIST2	Q8WVJ9	160 aa		10.84	□□□□□ -0.67
CAPN1-223	ENST00000533079	NEU4	Q8WWR8	484 aa	Predicted RBP	10.84	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms