RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SIRPAP78324 504 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 CDK5R1Q15078 307 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 SFXN4Q6P4A7 337 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 TMEM151BQ8IW70 566 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 NPEPL1Q8NDH3 523 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 PTPMT1Q8WUK0 201 aaPredicted RBP13.6□□□□□ -0.23
NUP54-217ENST00000514987 SNX33Q8WV41 574 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 ZMYND19Q96E35 227 aaPredicted RBP13.6□□□□□ -0.23
NUP54-217ENST00000514987 ZNF486Q96H40 463 aaPredicted RBP13.6□□□□□ -0.23
NUP54-217ENST00000514987 LCORQ96JN0 433 aaPredicted RBP13.6□□□□□ -0.23
NUP54-217ENST00000514987 LANCL2Q9NS86 450 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 ABRACLQ9P1F3 81 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 FBXL4Q9UKA2 621 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 MOKQ9UQ07 419 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 HIF3AQ9Y2N7 669 aa13.6□□□□□ -0.23
NUP54-217ENST00000514987 GNB5O14775 395 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 TFECO14948 347 aaPredicted RBP13.59□□□□□ -0.23
NUP54-217ENST00000514987 ZNF264O43296 627 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 LYRM1O43325 122 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 OR2B3O76000 313 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 GLCEO94923 617 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 GYPBP06028 91 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 RAB3BP20337 219 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 KIR2DL3P43628 341 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 ARL4DP49703 201 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 GFERP55789 205 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 NXPH1P58417 271 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 HSD11B2P80365 405 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 CSTF1Q05048 431 aaKnown RBP13.59□□□□□ -0.23
NUP54-217ENST00000514987 SKP2Q13309 424 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 P2RY14Q15391 338 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 NNATQ16517 81 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 NDUFA5Q16718 116 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 ZFP69Q49AA0 526 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 EMC4Q5J8M3 183 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 ATAD3CQ5T2N8 411 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 BAIAP2L2Q6UXY1 529 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 TRILQ7L0X0 811 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 KCTD20Q7Z5Y7 419 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 ATG4DQ86TL0 474 aaPredicted RBP13.59□□□□□ -0.23
NUP54-217ENST00000514987 OR5J2Q8NH18 312 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 THAP4Q8WY91 577 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 DDOQ99489 341 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 MMP28Q9H239 520 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 POU2F3Q9UKI9 436 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 RASD1Q9Y272 281 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 THADAQ6YHU6 1953 aa13.59□□□□□ -0.23
NUP54-217ENST00000514987 FAM240BA0A1B0GVZ2 78 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 CENPXA8MT69 81 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 NOTOA8MTQ0 251 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 ZNF879B4DU55 563 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 UTS2O95399 124 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 TFP02787 698 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 SPI1P17947 270 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 IGFBP4P22692 258 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 THBS2P35442 1172 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 ACVR1BP36896 505 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 PITPNBP48739 271 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 GDI2P50395 445 aaKnown RBP13.58□□□□□ -0.23
NUP54-217ENST00000514987 MRPL28Q13084 256 aaKnown RBP13.58□□□□□ -0.23
NUP54-217ENST00000514987 SRSF5Q13243 272 aaKnown RBP13.58□□□□□ -0.23
NUP54-217ENST00000514987 ELAVL1Q15717 326 aaKnown RBP13.58□□□□□ -0.23
NUP54-217ENST00000514987 NDUFAF6Q330K2 333 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 TP53I3Q53FA7 332 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 PYHIN1Q6K0P9 492 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 OVCH1Q7RTY7 1134 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 PLXDC1Q8IUK5 500 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 METTL27Q8N6F8 245 aaPredicted RBP13.58□□□□□ -0.23
NUP54-217ENST00000514987 LRRC17Q8N6Y2 441 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 C17orf47Q8NEP4 570 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 PHOSPHO1Q8TCT1 267 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 ARSGQ96EG1 525 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 PELI1Q96FA3 418 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 CMTM3Q96MX0 182 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 LAT2Q9GZY6 243 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 ZCCHC4Q9H5U6 513 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 PNO1Q9NRX1 252 aaKnown RBP13.58□□□□□ -0.23
NUP54-217ENST00000514987 C2orf42Q9NWW7 574 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 NCDNQ9UBB6 729 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 MALT1Q9UDY8 824 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 TEKT2Q9UIF3 430 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 TMEM184BQ9Y519 407 aaPredicted RBP13.58□□□□□ -0.23
NUP54-217ENST00000514987 CLCA3PQ9Y6N3 262 aa13.58□□□□□ -0.23
NUP54-217ENST00000514987 IGKV1D-42A0A075B6H8 117 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 IGKV3D-11A0A0A0MRZ8 115 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 A0A1B0GTQ1 180 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 FLRT2O43155 660 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 ORC5O43913 435 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 CD14P08571 375 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 TACSTD2P09758 323 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 NR4A2P43354 598 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 PITPNAQ00169 270 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 ZNF74Q16587 644 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 DEFB133Q30KQ1 61 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 TBRG1Q3YBR2 411 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 YOD1Q5VVQ6 348 aaPredicted RBP13.58□□□□□ -0.24
NUP54-217ENST00000514987 SLC6A19Q695T7 634 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 JAZF1Q86VZ6 243 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 NR2C2APQ86WQ0 139 aa13.58□□□□□ -0.24
NUP54-217ENST00000514987 SAMD12Q8N8I0 201 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms